Chromobacterium phragmitis IIBBL 274-1: DK843_10350
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Entry
DK843_10350 CDS
T05744
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
chrb
Chromobacterium phragmitis IIBBL 274-1
Pathway
chrb03030
DNA replication
chrb03430
Mismatch repair
chrb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DK843_10350
03430 Mismatch repair
DK843_10350
03440 Homologous recombination
DK843_10350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrb03032
]
DK843_10350
03400 DNA repair and recombination proteins [BR:
chrb03400
]
DK843_10350
Enzymes [BR:
chrb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DK843_10350
DNA replication proteins [BR:
chrb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DK843_10350
DNA repair and recombination proteins [BR:
chrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DK843_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AXE34664
UniProt:
A0A344UHB6
LinkDB
All DBs
Position
2148120..2151560
Genome browser
AA seq
1146 aa
AA seq
DB search
MNAPRFVHLRLHSEFSITDGIVRLDDAVKRAVKEQMPALGVSDLMNLFGMVKFYKSCRNK
GIKPIVSADIWLENEEDRDKPYRLMLTAKNREGYRRLCELLTEAFSHNQYRGRAEVRREW
LASGDNSNLLCLSGAHLGDVGVALSMGQRDEARRRADYWAKLFPGAFYLEVQRVDSPQVE
SVVQATLWLAGETELPVVATHPIQFMDKGDFKAHEARVCIAEGYTLGDKRRPRSFHECQH
FLSADQMMERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMSLDDFLVHEAQR
GLEERLKQLYPDEAEREAKRPEYDARLKFECDTIIQMGFPGYFLIVADFIQWGKGNGCPV
GPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFDVDFCQENRWRVIEYT
RRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLIPLEANKPLSLTKAME
VEPQIGEIIESEGAGELIELAMTLEDLTRGIGMHAGGVLIAPGRLTDFCPLYIASGEGAS
PVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDTTGEEVDVAHLPLDDKPAYKVF
ATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLIPDFIQRMHGAKFEY
LHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRAMGKKKVEEMVAQRAMFV
QGAAKQDIPESKANEIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHHCAAYMAATMS
TELDNTDQLKVFYDDCQDSKNGIAFLPPDVNHSFYRFVPVSRQEIRYALGAIKGTGESAV
DHIVSAREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAFDAIEPNRALLFANVGLAM
EAAEQEHANANQGGLFDMFGDDVAPAVEMAATRPWSDAVKLAEEKLAIGFYLSDHPFTAY
EKEVRGFIKTPLSRLSPRKEPQLLAGFVTGIRVKVGNRGKMAFVQLDDGTAKLEVSLFAE
SFELNRDKLKEDVVLVVEGKVSEDSFAGPGRLRIIVDKLYSLGEARSRYARGLSLQLPAK
PDIARLKSELHPFKSQDAGCLVRLAYSNGQAKGELMLPQEWGVRLDDGLLLSLSDWLGEG
KVKVLW
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaccccgctttgtccatcttcgcctccactcggagttttccatcaccgacggc
atcgtccgcctcgacgacgcggtcaagcgcgccgtcaaggagcagatgcccgcgctaggc
gtgtcggacctgatgaatctgttcggcatggtcaagttctacaagagctgccgcaacaag
ggcatcaagcccatcgtctccgccgacatctggctggaaaacgaggaagaccgcgacaag
ccctaccggctgatgctgacggcgaagaaccgcgaaggctaccgccgcctgtgtgaattg
ttgaccgaggccttcagccacaaccagtaccgcggccgcgccgaggtcaggcgcgaatgg
ctggcgtccggcgacaacagcaacctgctgtgcctgtccggcgcccacctgggcgacgtc
ggcgtcgcgttgtcgatgggccagcgcgacgaggcgcgccgccgcgccgactactgggca
aaactgttcccaggcgccttctacctggaagtccagcgcgtggacagcccgcaagtcgag
agcgtggtgcaggccaccttgtggctggccggcgaaaccgagctgccggtagtggctacc
caccccatccagttcatggacaagggcgacttcaaggcgcacgaggcgcgggtgtgcatc
gccgaaggctacacgctgggcgacaagcgccgcccgcgcagttttcatgagtgccagcac
ttcctcagcgccgaccagatgatggagcgcttcgccgacatcccggaggcgctggccaat
accgtggaaatcgccaagcgctgcaatatctcggtggtgctgggcaagaactacctgccg
ctgttcccgacgccggacggcatgtcgctggacgacttcctggtccacgaagcccagcgc
ggcctggaagagcggctgaagcagctgtacccggacgaggccgagcgcgaggccaagcgg
ccggaatacgacgctcggctgaagttcgaatgcgacaccatcatccagatgggcttcccc
ggctacttcctgatcgtggcggacttcatccagtggggcaaaggcaacggctgcccggtg
ggccctggccggggctccggcgccggctcgctggtagcgtacagcctgtccatcaccgac
ctggacccgctgaaatacgcgctgctgttcgagcgtttcctgaacccggagcgggtgtcc
atgcccgacttcgacgtggacttctgccaagaaaaccgctggcgcgtgatcgaatacacc
cgccgcaaatacggcgaggaggcggtgagccagatcgccaccttcggcaccatgtcgtcc
aaatcggtgatccgcgacgtcggccgcgtgctggacctgcccttcggcctgtgcgaccgc
ctgtccaagctgatcccgctggaggccaacaagcccctcagcctgaccaaggcgatggag
gtggagccccagatcggcgagatcatcgaaagcgaaggcgcgggcgagctgatcgagctg
gcgatgacgctggaagacctgacccgcggcatcggcatgcacgccggcggcgtgctgatc
gcgccgggccgcttgaccgacttctgcccgctgtacatcgccagcggcgaaggcgcgtct
cccgtttcccagttcgacaaggacgacgtggagcaaatcggcctggtgaagttcgacttc
ctgggcctacgcaacctgaccatcatcgaacttgcgcagaagtacatcaaggacaccacc
ggcgaggaggtggacgtcgcccacctgccgctggacgacaagccggcgtacaaggtgttc
gccaccgccaacaccaccgccgtgttccagttcgagtccaccggcatgaagaagatgctg
gtggaggccaagcccagcaagttcgaggaaatcatcgccttcgtggccttgtaccgcccg
ggcccgatggacctgatcccggacttcatccagcggatgcacggcgccaagttcgagtac
ctgcatccgctgctggagccggtcttggccccgacctacggcatcatggtgtaccaggaa
caggtgatgcagtccgcccaggtgatcggcggctacagcttgggcggcgccgacttgctg
cgccgcgcgatgggcaagaaaaaggtcgaagagatggtggcccagcgcgcgatgttcgtg
cagggcgcggccaagcaggacattcccgagtccaaggccaacgaaatcttcgactacatg
gagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcgctggtggcc
taccacaccgcctggctgaaggcccaccattgcgcggcctatatggcggcgacgatgtcc
acggaattggacaacaccgaccagctcaaggtgttctacgacgactgccaggacagcaag
aacggcatcgccttcctgccgccggacgtcaaccacagcttctaccgcttcgtgccggtc
agccgccaggaaatccgttacgcgttgggcgcgatcaagggcaccggcgaatcggctgtc
gaccacatcgtatcggcgcgcgaggccggcggtcccttcaccgacctgttcgatttctgc
aagagaacggacaagaagctggtcaacaagcgggtgatcgaggcgctgatccgcgccggc
gccttcgacgccatcgaacccaaccgcgcgctgttgttcgccaacgtcggcctggcgatg
gaagccgccgagcaggaacacgccaacgccaatcagggcggcctgttcgacatgttcggc
gacgacgtcgcgccggcggtcgagatggcagccacccggccatggagcgacgcggtgaag
ctggccgaggaaaagctggcgatcggcttctacctgtccgaccacccgttcacggcctac
gaaaaagaggtgcgcggcttcatcaagacgccgctgtcccgcctcagcccgcgcaaggag
ccgcaactgctggccggcttcgtcaccggcatccgcgtcaaagtgggcaaccgcggcaag
atggccttcgtccagctggacgacggtaccgccaagctggaagtcagcctgttcgccgaa
agcttcgaactgaaccgcgacaagctgaaggaggacgtggtgctggtggtggaaggcaag
gtcagcgaagacagcttcgccggccccggccgcctgcgcatcatcgtcgacaagctgtac
agcctgggcgaggcgcgcagccgctacgcgcgcggcctgtccttgcagctgccggccaag
ccggatatcgccaggctcaagtccgagctgcatccgttcaagagccaggacgccggctgc
ctggtgcggctggcctacagcaacggccaggccaagggcgagttgatgctgccgcaggaa
tggggggtgcgcctggacgacggcctgttgttgtcattgtccgattggctgggcgaaggc
aaggtcaaggtgctgtggtaa
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