Chromobacterium phragmitis IIBBL 274-1: DK843_12980
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Entry
DK843_12980 CDS
T05744
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrb
Chromobacterium phragmitis IIBBL 274-1
Pathway
chrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK843_12980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrb03019
]
DK843_12980
Enzymes [BR:
chrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DK843_12980
Messenger RNA biogenesis [BR:
chrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK843_12980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UTP25_NTPase-like
UvrD-helicase
P-loop_SecA
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXE35121
UniProt:
A0A344UIM3
LinkDB
All DBs
Position
complement(2699495..2700910)
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AA seq
471 aa
AA seq
DB search
MSDLTFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTL
PLLQLLMRSPSHHAGRPRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQI
KALRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKLPA
KRQNLLFSATFSDEIKTLADKLLDNPKLVEVARRNTTNELVTQKVHLVDRDKKTELLIHL
IREHNWFQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVL
VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRD
IEKLIKMSIERFTVPGFEADLNVKPEPIPMGGGARGRGQGQGRGGQGQGQRHGQGQGQPR
NAPAKPRHQTESKPAGHGRNGGPRQGQGGGQGRSSKPAAAKSALFSPPKNR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcttaccttcgccgacctaggcctggccgacccgctgctgcgcgcggtggcc
gacaccggttataccacgccgacgccgattcaggctcaggcgattccccaggtgctgcaa
ggcggcgacctgttggccgcggcccagaccggcaccggcaagaccgccggtttcaccctg
ccgctgctgcagctgttgatgcgttcgcccagccatcatgccggccgcccgcgcgcgctg
gtgctgaccccgacccgcgagctggccgcccaggtggaagagtcggtgcgcacctacagc
aaatacctgcccttgaagtcgctggtgatgttcggcggcgtcaacatcaatccgcagatc
aaggccttgcgcgcgccggtggacatcctggtggcgacgccgggccgcctgctggaccac
gtcggccagaagaccgtcgacctgtccggcgtcgagatcctggtattggacgaagccgac
cgcatgctggacatgggcttcatccacgacatcaagaaggtgctggccaagctgccggcc
aagcgccagaacctgctgttctcggccaccttctccgacgagatcaagacgctggccgac
aagctgctggacaaccccaagctggtggaagtggcgcgccgcaacaccaccaacgagctg
gtgacgcagaaggtacacctggtcgaccgcgacaagaagaccgagctgttgatccatctc
atccgcgagcacaattggttccaggtgctggtgttcacccgcaccaagcacggtgccaac
cgcctggcggaaaagctggacaagatcggcattccggccgcggccatccacggcaacaag
agccagaacgcgcgcacccgcgccctggctgatttcaagagcggcgaattgcaagtgctg
gtggccaccgacatcgccgcgcgcggcctggacatcgaccagctgccgcacgtggtcaac
ttcgagctgcccaatgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcc
ggcagtccgggcgaagcgctgtcgctggtgtgcgtcgacgagttcagcttcctgcgcgac
atcgagaaactgatcaagatgtcgatcgagcgtttcaccgtgccgggcttcgaagccgac
ttgaacgtcaagccggagccgattccgatgggcggcggcgcccgcggccgcggacaaggc
cagggacgcggcggccagggacaaggccagcgccacggccaggggcagggccaaccacgc
aacgcgccggccaagccgcgccaccagaccgaaagcaagccggccggccatggccgcaac
ggcggcccgcgccagggccagggcggcggccaggggcgctcgtccaagccggcggcggcc
aagtccgcgctgttcagcccgccgaaaaaccgctga
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