Chromobacterium phragmitis IIBBL 274-1: DK843_17980
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Entry
DK843_17980 CDS
T05744
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrb
Chromobacterium phragmitis IIBBL 274-1
Pathway
chrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK843_17980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrb03019
]
DK843_17980
Enzymes [BR:
chrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DK843_17980
Messenger RNA biogenesis [BR:
chrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK843_17980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AXE36030
UniProt:
A0A344UL82
LinkDB
All DBs
Position
3739887..3741206
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AA seq
439 aa
AA seq
DB search
MLFSELGLSPEILRAIEEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQ
TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP
KERQTLLFSATFAPEIKRLAADFMRSPQTVEVARQNATNDQVEQLVYQVDNFKKRQLLAH
LIRSREMSQVIVFCKTKISADQLSRDLKRDGLNAEAIHGDKTQGTRLETLAAFKEGSLRV
LVATDVAARGLDISELPYVVNFELPNSPEDYVHRIGRTGRAGAKGVAISLMCPEESKQHE
AIERLTKQTLPPQNADGFWPSWLPRPNKPAREPAPSAPALSSGKSEGLKQARAGRRSRKG
KREIPALLLPPRYKVEIIR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccgaactcggcttgtcgccggagatcctgcgcgccatcgaagagcagggc
tatagccagccgacgccgatccaggagaaggcgattcccctggtgctgtccggccgcgac
ctgcttgccgccgcgcagaccggcaccggcaagaccgcggctttcatgctgccgatactg
gagcgcttgaagaagttcgccaataccagcgtgtcgccggccatgcatccgattcgcgcg
ctggtgctgtccccgacgcgggagttggcagaccagatcggcgtcaatgtgcagacttac
accaagtatctgccgttgcgcgccaccaccgtcttcggcggcgtcaacatggatccgcaa
acccaggagctgcgccgcggcgtggaaatcctgatcgcgacgccgggccgcttgctggac
cacatccagcaaaagaccgtgcagttgaacaaggtggaagtgctggtgctggatgaaggc
gaccgcatgctggacatgggcttcatccaggatatccgcaagatcatgggcatgctgccc
aaggaacggcagacgctgctgttctcggcgacgttcgcgcccgagatcaaacgcctggcc
gccgatttcatgcgctctccgcagacggtggaagtcgcgcgccagaacgccaccaacgac
caggtggaacagctggtgtaccaagtggacaatttcaagaagcgccagttgctcgctcac
ctgattcgctcgcgcgagatgagccaggtcattgtcttttgcaagaccaagatcagcgcc
gaccagctgtcgcgggacttgaaacgcgacgggctgaatgccgaggcaatccacggcgac
aaaacgcagggcacgcggctggagacgctggcggccttcaaggaaggctcgctgcgcgtg
ctggtggccaccgacgtggcggcgcgcggcctggatatctcggagctgccctatgtggtg
aatttcgagctgcccaattcgccggaagattacgtgcaccgcatcggccgcaccggccgc
gccggcgccaaaggcgtggcgatttctctgatgtgcccggaggagtccaaacagcatgag
gcgatcgagaggctgaccaagcagacgctacctcctcagaacgccgacggtttctggccg
tcctggctgccgcgtcccaacaagcctgcgcgcgaacccgcgccgtcggctccggccttg
tccagcggcaagagcgaggggttgaagcaggcgcgcgccggccggcgcagccgcaaaggc
aagcgcgagattccggccctgctgctgccgccgcgctacaaagtggaaatcatccgctga
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