Chryseobacterium gotjawalense: QGN23_00145
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Entry
QGN23_00145 CDS
T09471
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrc
Chryseobacterium gotjawalense
Pathway
chrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QGN23_00145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrc03019
]
QGN23_00145
Enzymes [BR:
chrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QGN23_00145
Messenger RNA biogenesis [BR:
chrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QGN23_00145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YibE_F
Motif
Other DBs
NCBI-ProteinID:
WHF51711
LinkDB
All DBs
Position
33380..34732
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AA seq
450 aa
AA seq
DB search
MEKMTFADFDLPEKILDVLADSNLFEPTPIQQKTLSPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYNKTGNPTVLILVPTRELVVQVAGIVEHLTQNITARVIGIYGGKNIKTQKLLF
ADGCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFKAQLTHIFQMMKEKRQ
NILFSATMTEAVDALLYEYFSGPMEISLAKSGTPLEKIEQIGYKVENFNTKINLLQHLLQ
TDKDFSKVLIFCNNKKHADLLYTKIEELFPDQFDVIHSNKSQNYRLNAMKSFESQEVRGL
ITTDIMARGLDISDITHVINFEIPEVPEQYIHRIGRTGRADKNGIAVSFVTKNEESQLLD
IEILMDKSVIIKEFPAEVKINPVKIASEKDEVVMKNAHTVKLEDGGGAFHEKKDKNKKEN
WGGPHARKIPKKIGANRAQEKAKSKAKKKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatgacctttgccgatttcgatcttcccgaaaaaattcttgatgttttagca
gattctaatttatttgaaccgacaccgattcaacagaaaaccctgagcccgattctttca
ggacgggacgtgatgggaattgcgcaaaccgggaccggaaaaactttggcatatctcctt
ccggttcttaaaacctggaaatataataaaacaggcaacccaacagtgcttattcttgtt
ccaacccgtgaactggtcgttcaggttgcaggaattgttgaacatttaacccaaaatatt
accgccagggtcatcgggatttacggtggaaaaaatattaaaactcaaaaattacttttt
gcagatggttgtgatatcctcgtaggaactcccggaagagtgatggatttggcgattgac
aatgcgatttctttaaaagaagtacagaaattaatcatcgatgaatttgatgaaatgctg
aatctgggtttcaaagcgcaattgacgcatatcttccaaatgatgaaagaaaaaagacag
aatattcttttttctgcgaccatgaccgaagccgtagatgctttgctctacgaatatttt
tccggcccgatggaaatttcattggcgaaatcaggaacgccgcttgaaaaaattgaacag
attggttataaagtggaaaactttaataccaaaattaatttgctgcaacatcttttacaa
acagataaagacttttcgaaagttcttattttctgtaataataagaaacatgccgattta
ctttatactaaaatcgaagaattattcccggatcagtttgacgttattcactccaataaa
tcacagaattaccgtttgaatgcgatgaaaagtttcgaatcgcaggaagttcgcggtttg
attaccaccgatattatggcgcgtggtttagatatttctgatattacccacgttattaat
tttgaaatcccggaagttccagaacaatacatccacagaattggtagaaccggtcgtgca
gataaaaatggtattgccgtttcttttgtgactaaaaatgaagaaagccaattattagat
attgaaattttaatggacaagtcggtaatcatcaaagaattcccggctgaagttaaaatc
aatcctgtgaaaatcgcttctgaaaaagatgaagtggtgatgaaaaatgcccatactgta
aagcttgaagatggtggtggcgcatttcacgagaaaaaagacaagaacaaaaaagaaaac
tggggtggccctcacgcaagaaagattccgaaaaaaattggagccaaccgcgcacaggaa
aaagcaaaatcaaaagccaagaaaaagaaataa
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