Chryseobacterium gotjawalense: QGN23_00870
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Entry
QGN23_00870 CDS
T09471
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chrc
Chryseobacterium gotjawalense
Pathway
chrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QGN23_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrc03019
]
QGN23_00870
03009 Ribosome biogenesis [BR:
chrc03009
]
QGN23_00870
Enzymes [BR:
chrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QGN23_00870
Messenger RNA biogenesis [BR:
chrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QGN23_00870
Ribosome biogenesis [BR:
chrc03009
]
Prokaryotic type
rRNA helicases
QGN23_00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WHF51845
LinkDB
All DBs
Position
205036..206823
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AA seq
595 aa
AA seq
DB search
MNLFTETNLSPEILKAIGELGFISPTEIQKQTIPFISTDTRDLIALAQTGTGKTAAFTLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDIINYSKYMRNIKTTAVYGGSSISDQIRSLR
DKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLATILNETPETKQT
FLFSATMNREVERISKNYLTNPHRIVVGSLNEVKKNIKHEYYVVGYRNKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKQS
TKIEIVEKKIPTGKKIIEAQVAGVFEKLFTEHENLVEFDNELIPDLSAFTKEELVHQLLQ
LQLRDMALYYKDKDDLVDQKFNSDDRGGDRGRDRDGRGRDRDRGDRRDSGNRFSNNRDGG
SRDGGRDRDGGNRDSRERDGGNRGESRDRKPRRNDGDMVRFFFNLGKRDNLKKIDMLEII
NKSTEKSRKRPDIGNIEILEKFSFFEVEKSFKDEVLKGLQTQKFKGKDMRAEESN
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagccctgaaatcttgaaggcaattggcgaactg
ggctttattagcccaacagaaatccaaaaacagactattccttttatctctacagataca
cgcgatctaatcgcacttgcgcagacgggaacaggcaaaacagcagcgtttacgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaattattggtgctttgtccaacc
agagaactttgtttgcagattaccaaagacattattaattattcgaaatacatgcggaac
atcaaaactacagcagtttatggtggaagcagtatcagtgatcaaatcagatcgctacgg
gacaaaccacagattattgtggggacgccaggtagggtgattgacctgatcaacagaaaa
gcccttgatttctctgaaatccagtggttggtgcttgatgaagctgatgaaatgttatca
atgggtttcaaagatgatttggcaactattttaaacgaaacaccggaaaccaaacaaact
ttcttattttcggcaacgatgaatagagaagtggaaagaatttctaaaaactatttgacg
aatcctcaccgaattgttgtgggttctttaaatgaggtgaagaaaaatatcaaacacgaa
tattacgtggtgggttacagaaacaaaaaagaagctttgaaaagactgatcgatgcaaat
ccaaatcagtattcaattcttttctgtagaacccgtatggaaactcaggaagtcgctgac
tttttgatgcagaacggttacgcggcagatgcacttcacggtgatttatctcaggcgcaa
cgggatacagtgatgaagaaattccgtttgaaaaacatcgatatccttgtggcaaccgat
gttgcggcgagaggattagatgtagattcattaacccacgtgattcacttctctttaccg
gatgatcctgaagtatttgttcaccgtagtggtagaacaggccgtgctggaaaagacggt
atttcaattgcattaattaaaccggaggaatccagaaagttaaagcagattaaacagtct
accaagattgaaatcgttgagaaaaaaatcccaacgggtaaaaagattatcgaagcacag
gttgccggcgtattcgaaaagttatttacagagcatgaaaatcttgttgaattcgacaat
gagttgattccggatttatcagcttttaccaaagaagaattggttcaccagttattgcag
ttgcagttgagagacatggcgctttactataaagataaagacgatttggttgatcagaaa
ttcaacagcgatgatcggggcggagaccgtggcagagaccgcgacggaagaggcagagac
cgcgacagaggtgacagaagagatagcggaaaccgtttcagtaataaccgtgatggtgga
agcagagatggtggaagagaccgcgatggtggaaaccgtgattccagagaacgagatggt
ggaaacagaggcgaatccagagacagaaaacctagaagaaatgatggagatatggtacgg
tttttctttaacttaggaaaacgggacaacttgaaaaaaattgacatgcttgaaatcatc
aacaagtctactgaaaaatcaagaaaaagaccagatattgggaatatcgaaattttagag
aaattctcattctttgaagtagaaaaatcatttaaagacgaagtccttaaaggattacaa
actcagaagtttaaaggaaaagacatgagagcagaagaatctaactaa
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