Chryseobacterium sp. D764: KYG33_12105
Help
Entry
KYG33_12105 CDS
T10717
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chrd Chryseobacterium sp. D764
Brite
KEGG Orthology (KO) [BR:
chrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chrd03009
]
KYG33_12105 (rlmD)
Enzymes [BR:
chrd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KYG33_12105 (rlmD)
Ribosome biogenesis [BR:
chrd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KYG33_12105 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
N6_N4_Mtase
Methyltransf_11
Methyltransf_15
MTS
TRM5-TYW2_MTfase
Methyltransf_4
RrnaAD
FtsJ
PCMT
PrmA
NpmA
Motif
Other DBs
NCBI-ProteinID:
QXU47555
LinkDB
All DBs
Position
complement(2675065..2676477)
Genome browser
AA seq
470 aa
AA seq
DB search
MSRKKKRDLILENIKLLTAGAKGVAIGRTEEGKAVMVSGAIPGDIVNVRVKKAKSKYYEG
EAVEVIEKSPYRADPKCVHFGTCGGCKWQNMSYEKQLDFKQEEVYNNIKRIGGIDDFETV
SILGAEEQYFYRNKMEFSFSNARWLTQYEISSEENFGSKDALGFHIPGMWSKILDLKECF
LQEDPSNAIRLAVKEYGVNNGLDFFDVRNQEGFLRTLMMRQNSKGEWMVLFQLYREEKEN
REKLFEFLLEKFPQIKTLVYAINPKQNDSIYDLNINVYFGEGYLMEEMDGLQFKIGPKSF
FQTNYKQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDA
AIEHAALNGLTNCTFYCGDMKDIFNDEFMATHPKADVLITDPPRDGMHQKVVEQILKLSP
EKVVYVSCNSATQARDLALMKDHYTLVKILPVDMFPQTHHVENIALLIKK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagtaggaagaaaaaaagagatttaattcttgaaaatataaagctattgactgccgga
gcaaaaggagtggcaataggaaggacagaagaaggaaaagctgtaatggtttcaggagct
attccaggtgatattgtaaatgtaagagtgaaaaaagcgaagtcaaaatattatgaaggc
gaagcggttgaagttattgaaaaatcaccttacagagcagatccaaaatgtgttcatttc
ggaacttgtggaggctgcaaatggcagaacatgagctacgaaaagcagcttgattttaaa
caggaagaagtatataataatattaaaagaatcggtggaattgatgactttgagacggta
tcaattctgggagctgaagaacagtatttttatagaaataaaatggaattctccttctca
aatgcaagatggcttactcaatatgaaatcagttctgaagaaaacttcggaagtaaagat
gcgttaggattccatattcccggaatgtggagtaaaattcttgatttaaaagaatgtttc
cttcaggaagacccttccaatgcaataagactggctgtaaaagaatatggagtaaacaac
ggtctggatttctttgatgtaagaaaccaggaaggttttttaagaaccttgatgatgaga
caaaattccaaaggagaatggatggttcttttccagctttacagagaagaaaaagaaaac
agagaaaaactttttgaattcttactggaaaaattcccgcagattaaaacattagtatat
gctatcaatcctaagcagaatgattccatttacgatttaaatatcaatgtatattttgga
gaaggttaccttatggaagaaatggacggactgcagtttaagataggcccgaaatcattc
ttccagaccaactacaaacaggctttggaactgtacagaaagacacttgaatttgcagat
ctgaaaggagatgaagttgtatatgacctttatacagggacaggaacaattgctcagtat
gtagcgagaaatgcaaaacaggtaatcggaatagaatctgtacaggaagccatagatgct
gctatagaacatgctgcattgaacggtcttactaactgtactttctattgtggagacatg
aaggatatcttcaatgacgaatttatggcaactcatcctaaagcagatgtattaattaca
gatccaccaagagacggaatgcaccagaaggtcgtagaacagatcttaaagctttcaccg
gaaaaagtagtttacgtaagctgtaattctgcaacacaggcgagagaccttgccttgatg
aaagaccattatactttagtgaagattttgccggtagacatgttcccacaaacacaccat
gttgagaacattgcgttgctgattaaaaaataa
DBGET
integrated database retrieval system
