Chryseoglobus sp. 28M-23: IE160_00945
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Entry
IE160_00945 CDS
T06824
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chre
Chryseoglobus sp. 28M-23
Pathway
chre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IE160_00945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chre03021
]
IE160_00945 (rpoC)
03400 DNA repair and recombination proteins [BR:
chre03400
]
IE160_00945 (rpoC)
Enzymes [BR:
chre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IE160_00945 (rpoC)
Transcription machinery [BR:
chre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IE160_00945 (rpoC)
DNA repair and recombination proteins [BR:
chre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IE160_00945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Not3
TBPIP
DUF4472
Hanta_Gc_C
Motif
Other DBs
NCBI-ProteinID:
QOD93841
UniProt:
A0A7L8D4T4
LinkDB
All DBs
Position
195104..198949
Genome browser
AA seq
1281 aa
AA seq
DB search
MLDATTFDYLQIGLATAENIRKWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEGRHADLPGLENELRLEIKTLEDQRDSGIASRMQKLETE
LAELEAEGAKADQKRKTKDAGEKEMAQLRKSFDEQIGQLERVWEDFRTLKVGDLKPEDAV
FQELQDRFGLYFEAYMGAEAIQKRLEAFDLATESEQLHEQIAAGKGQKKIRAIKRLKVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKIMALELFKPFVIKRLIDLGHAQNIKSAKRMVERSR
PQVWEVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTVPTQDMIIGLHHLTTEREGAEGEGR
AFSTIPEAIMAMDQGSLHLNAKIRIRLEGQKYGGRQLKETTLGRALFNELMPEDYPFIAD
VADKGTISQIVNNLAERYPKTVVAATLDKMKDAGFYWATRSGVTVALSDVLTPPRKKEIV
ATYEARAAKIQGQFDKGLTTDDERRAELVALWTEATKEVNTEMRANIPLDNTINRMVTSG
ARGNWLQVGNIAGMRGLVSNPRGEIIARPIINSYREGLSVAEYFIATHGARKGLADTALR
TADSGYLTRRLVDVAQDVIIREEDCGTSKGLDFPIAHEVDGAWVRDDNVENLVFARTLAA
DAVDAKGTVVLEAGSDVGDVQITALVDAGVAEIKVRSVLTCESAVGVCASCYGRSMATGT
RVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSAGADDITQGLPRVTELFEARTPKGASP
IAESAGRITIEETEKQRRIVLTPDNGDEPVAVVVSKRVSLLVEDGQHVELGHQFFEGPVD
PKEVLRVKGVRAVQQHLVEGVQGAYRSQGVPIHDKHIEVIVRQMLRKVTVVDHGETELLP
GELVDRSKYNSLNRAALSESKKTASARQEVMGITKASLATESWLSAASFQETTRVLTEAA
MQGKRDPLLGLKENVIIGKLIPAGTGLPAYRNVSVEATEEAKSERYPNRIFADDSSFTEA
DLSFVDFDSFSSDEPTPGTYS
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaacaactttcgactacctccagatcggcctggctaccgccgagaacatc
cgcaagtggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cctgagaaggacggcctgttcggcgagcagatcttcggcccctcgcgcgactgggagtgc
tcgtgcggcaagtacaagcgggtgcgcttcaagggcatcgtgtgcgagcgctgcggcgtc
gaggtcacgaagtcctcggtgcgccgcgagcgcatgggccacatcgagctcgccgctccg
gtcacgcacatttggtacttcaagggtgtgccgagccgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctcggtcgac
gaggaaggtcgccacgccgacctccccgggctcgagaacgagctgcgcctcgagatcaag
accctcgaggaccagcgcgacagcggcatcgcctcgcgcatgcagaagctcgagaccgag
ctcgccgagctcgaggccgagggcgccaaggccgatcagaagcgcaagaccaaggacgcc
ggtgagaaggagatggcgcagctgcgcaagtccttcgacgagcagatcggtcagctcgag
cgagtgtgggaggacttccgcaccctcaaggtgggcgacctcaagccggaagacgccgta
ttccaggagctgcaggaccgcttcggtctgtacttcgaggcctacatgggcgccgaggcg
atccagaagcgcctcgaggccttcgacctggcgaccgagagcgagcagctccacgagcag
atcgcggctggcaagggtcagaagaagattcgtgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgcagacgggcaattcgcccgccgcgatggtgctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggacgcttcgcgacgagcgacctc
aacgacctgtaccggcgtgtgatcaaccgcaacaaccgcctgcgccgccttctcgacctc
ggagcacccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtggacgcg
ctgttcgacaacggtcgtcgcggccggcccgtcacgggcaccggaaaccgcgcgctcaag
tcgctcagcgacatgctcaagggcaagcagggtcggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgctcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgccgaagatcatggcgctcgagctcttcaagccgttcgtcatcaagcgcctc
atcgatctgggccacgctcagaacatcaagagcgccaagcgcatggtcgagcgctcgcgg
ccgcaggtgtgggaggtgctcgaggagatcatccgcgagcgccccgtgctcctcaaccgc
gcgcccacgctgcaccgtctgggcatccaggcgttcgagcctcagctcatcgagggcaag
gcgatccagctgcacccgctcgtgtgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggtcgaggcccaggccgaggcgcgcatcctcatgctc
gcctcgaacaacatcctcaagccctccgacggccgccccgtgacggtgccgacgcaggac
atgatcatcggtctgcaccacctcacgaccgagcgcgaaggcgccgagggcgagggtcgt
gccttctcgacgatccccgaggcgatcatggccatggatcagggctcgctgcacctcaac
gcgaagatccgcatccgtctcgagggccagaagtacggcgggcgccagctcaaggagacg
acgctcggtcgcgccctcttcaacgagctcatgccggaggactacccgttcatcgccgat
gtcgccgacaagggcacgatcagccagatcgtcaacaacctggctgagcgctacccgaag
acggtcgtcgcggcgacgctcgacaagatgaaggacgccggcttctactgggcgacgcgc
tcgggagtcacggtcgcgctgagcgacgtgctcacgccgccgcgcaagaaggagatcgtg
gcgacctacgaggctcgcgccgcgaagatccagggtcagttcgacaagggtctgacgacc
gatgacgagcgtcgcgccgagctggtcgcgctgtggacggaggcgaccaaggaggtcaac
accgagatgcgcgcgaacatcccgctcgacaacaccatcaaccgcatggtcacctccggt
gcccgcggtaactggctgcaggtcggaaacatcgccgggatgcgcgggctcgtgtcgaac
ccccgtggtgagatcatcgcccgtccgatcatcaactcgtaccgcgagggcctctcggtg
gcggaatacttcatcgccacgcacggcgcgcgcaagggtctcgccgacacggcgctgcgc
acggcggactcggggtacctgacgcgtcgactcgtcgatgtcgcgcaggacgtcatcatc
cgcgaggaggactgcggcacgtccaaaggcctcgacttcccgatcgcccacgaggtggat
ggcgcctgggtgcgcgacgacaacgtcgagaacctcgtgttcgcccgcaccctcgcggcc
gacgctgtcgacgccaagggcacggtcgtgctcgaggcgggatccgatgtcggcgacgtg
cagatcacggcgctcgtcgatgcgggcgtcgctgagatcaaggtgcgctcggtcctgacc
tgcgagtccgcggtcggggtgtgcgcatcctgctacggccgctccatggccacgggcacg
cgcgtcgacctgggtgaggccgtgggcatcattgcggcccagtcgatcggcgagcccggc
acgcagctcacgatgcgcaccttccacacgggtggttcggcgggagcggacgacatcacg
cagggtctgccccgcgtgacggagctcttcgaggctcgcaccccgaagggcgcgagcccg
atcgcggagagcgccggtcgcatcacgatcgaggagaccgagaagcagcgccgtatcgtg
ctgacgcccgacaacggcgacgagcctgtcgcggtcgtcgtgtcgaagcgcgtctcgctc
ctggtcgaggacggccagcacgtcgagctcggccaccagttcttcgagggtccggtggac
ccgaaggaggtcctgagggtcaagggcgtgcgtgctgttcagcagcacctcgtcgagggc
gtgcagggtgcgtaccgctcgcagggtgtcccgatccacgacaagcacatcgaggtcatc
gtgcgccagatgctgcgcaaggtcaccgtggtcgaccacggcgagaccgagctgctgccc
ggtgagctcgtcgaccgctcgaagtacaactccctcaaccgggctgcgctctccgagtcc
aagaagacggcgtccgcgcgtcaggaggtcatgggtatcacgaaggcctcgctggccacc
gagtcgtggctctcggccgcgtccttccaggagacgacgcgcgtgctcaccgaggccgcc
atgcagggaaagcgcgaccctctgctgggcctcaaggagaacgtcatcatcggaaagctc
atcccggccggtaccggcctgcccgcgtaccgcaacgtgtcggtcgaggcgacggaggag
gcgaagtcggagcgctacccgaaccgcatcttcgccgacgactcgagcttcaccgaggcg
gacctctcgttcgtcgacttcgactcgttctcgagcgacgagccgacgcccggcacgtac
agctag
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integrated database retrieval system
