Chryseoglobus sp. 28M-23: IE160_08255
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Entry
IE160_08255 CDS
T06824
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
chre
Chryseoglobus sp. 28M-23
Pathway
chre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE160_08255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chre03019
]
IE160_08255
03009 Ribosome biogenesis [BR:
chre03009
]
IE160_08255
Enzymes [BR:
chre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IE160_08255
Messenger RNA biogenesis [BR:
chre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IE160_08255
Ribosome biogenesis [BR:
chre03009
]
Prokaryotic type
rRNA processing factors
IE160_08255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
ATP-cone
Motif
Other DBs
NCBI-ProteinID:
QOD92943
UniProt:
A0A7L8D3L1
LinkDB
All DBs
Position
complement(1679317..1681920)
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AA seq
867 aa
AA seq
DB search
MVSDETPKKTPKKRTGLFGGRAPKKAAEHAGSASRPDVLPTPEPEAVAEAPAEKPAEAPA
ESPVAEAPAKAKPARKAPAKKAPAQKADATKDDAAKADAAQDDVQADAAKAEGAGGAFPE
LKPESTTSLLFFAPPPEAVAPLRGGRGRDEEPESDEPSGSSRRRSRSRRGRGGASGDADG
QRDDSRDDAREDSGRDGGRDGGSSRSRQRRQPEPITEPQRIKGSTRLEAKKQRRRDGRDA
GRRRAVVTEAEFLARRESVDRVMVVRSKDNRIQIGVLEDEVLVEHYVARSSESSIIGNVY
LGKVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDAAAEAGEKNQPRRIELALKPGDKVLV
QVTKDPIGHKGARLTSQVSLPGRYLVYVPNGSMSGISRKLPDTERARLKKILKEVLPENV
GVIVRTAAEGATEEQLTLDVERLTKQWSEISKQVEKAQAPAMLHSEPDLLVKIVRDVFNE
DFRAMIIHGEDAHSTITGYLSSVAPDLLDRVQKHDGDVDPFDEHRINEQIEKALERKVWL
PSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIV
VDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRLGLGLLETFSENC
DVCAGRGLILHHDPVVKHRGNDGGGGGDSRRRGGSGGGRGGSGSSGGRGGSSGSQQKSGN
GNGTHAITDDVSKALAAIAAKTVHHDAPATGAAEKTGVVKPISSGAGGSAASESGVTESG
VVEPSPAAVEEAAAILDIPLTKKPERARPAIDPDAAQQLLGSVLESLPEPPAPGTRKRGS
RRATTGTITAGTSEAERSGGDGAASGS
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgacgagacaccgaagaagacccccaagaagcgcaccggactgttcggcggc
cgagccccgaagaaggcggcggagcacgcgggcagcgcgagccgccccgacgtgctgccg
acgcccgagccggaggccgtcgccgaggcgccggccgagaagcctgccgaggcgcccgct
gagtcgccggtcgctgaggcgccggcgaaggcgaagccggcccgcaaggctcccgcgaag
aaggctcctgcacagaaggccgatgccacgaaggacgacgctgcgaaggctgacgccgcg
caggatgacgtgcaggcggatgccgcgaaggccgagggtgcgggcggcgcattccccgag
ctcaagcccgagtcgacgacgtcgctgctgttcttcgcgccgccgcccgaggccgtcgcg
ccgttgcgcggcgggcgcgggcgcgacgaggagcccgagagcgacgagccctccggctcg
agccgccggcgctcgcgctcgcgccgtggtcgaggcggagcatccggagacgccgacggc
cagcgcgacgactcgcgcgacgacgcccgcgaggacagcggccgtgacggcggccgtgac
ggagggtcctcgcgcagccgccagcgccggcagcccgagccgatcaccgagccgcagcgc
atcaagggctcgacgcgcctcgaggccaagaagcagcgccgccgcgacggtcgcgacgcc
ggccgccgccgtgcggtcgtcaccgaggccgagtttctcgcgcgccgcgagagcgtcgac
cgcgtcatggtcgtgcgctccaaggacaaccgcattcagatcggcgtgctcgaggacgag
gtgctcgtcgagcactacgtcgcccgctcgagcgagtcgagcatcatcggcaacgtctac
ctcggcaaggtgcagaacgtgctgccgagcatggaggccgccttcgtcgacatcggtcgc
ggtcgcaacgcggtgctgtactccggcgaggtcgactgggatgccgctgccgaggccggc
gagaagaaccagccgcgccgcatcgagctcgccctcaagccgggcgacaaggtgctcgtg
caggtcacgaaagacccgatcggccacaagggtgcccggctcacgagccaggtgagcctg
ccaggccgctacctcgtctacgtgcccaacggctccatgagcggcatcagccgcaagctg
cccgacaccgagcgcgcacgcctcaagaagatcctcaaggaggttctgcccgagaacgtc
ggcgtcatcgtgcgcacggcggccgaaggcgcgaccgaggagcagctcacgctcgacgtc
gagcgcctcacgaagcagtggagcgagatcagcaagcaggtcgagaaggcgcaagcgccc
gcgatgctgcacagcgagcccgacctcctcgtcaagatcgtgcgcgacgtcttcaacgag
gacttccgcgccatgatcatccacggtgaggatgcccactccacgatcaccggctacctc
agctccgtcgcccccgacctcctcgaccgcgtgcagaagcacgacggcgacgtcgacccg
ttcgacgagcaccgcatcaacgagcagatcgagaaggctctcgagcgcaaggtgtggctg
ccctccggcggctcgctcgtcatcgaccgcacggaggcgatgacggtcgtcgacgtcaac
acgggcaagttcgtcggctccggcggcaacctcgaggagaccgtcacgaagaacaacctc
gaggcggccgaggagatcgtgcgccagctgcggctgcgcgacatcggcggcatcatcgtc
gtcgacttcatcgacatggtgctggagtcgaaccgcgacctcgtgctgcggcgcctcgtg
gagtgcttgagccgcgaccgcaccaagcaccaggtggcggaggtcacgagcctcggcctc
gtgcagatgacgcgcaagcgactcggcctcggcctgctggagaccttcagcgagaactgc
gacgtgtgcgccggccgtggcctcatcctgcatcacgaccccgtggtcaagcaccgcggc
aacgacggcggcggtggcggcgacagtcgtcggcgcgggggcagcggtggcggtcgtggt
ggctccgggtcctccggcggtcgcggcgggtcctccggctcgcagcagaagtcgggcaac
ggcaacggcacgcacgcgatcaccgacgacgtcagcaaggcgctcgcggcgatcgcggcg
aagacggtgcaccacgacgcgcccgcaacgggtgcggccgagaagaccggtgtcgtcaag
ccgatctcgtccggcgccggtgggtcggctgcgtccgagtccggcgtcaccgagtccggc
gtcgtcgagccgagcccggcggcggtcgaggaggccgcggcgatcctcgacatcccgctc
acgaagaagcccgagcgtgcgcgccccgcgatcgacccggacgccgcccagcagctgctc
ggctcggtgctcgagtcgcttcccgagccgcccgcacccggcacccgcaagcgcggctcg
cgtcgcgccacgacgggcaccatcacggcgggcacgagcgaggcggagcgctccggcggc
gacggcgcagcatccggctcgtag
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