Chryseobacterium sp. PCH239: KBP46_01625
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Entry
KBP46_01625 CDS
T11096
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chrh Chryseobacterium sp. PCH239
Pathway
chrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP46_01625 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrh03019
]
KBP46_01625 (recQ)
03400 DNA repair and recombination proteins [BR:
chrh03400
]
KBP46_01625 (recQ)
Enzymes [BR:
chrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KBP46_01625 (recQ)
Messenger RNA biogenesis [BR:
chrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KBP46_01625 (recQ)
DNA repair and recombination proteins [BR:
chrh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KBP46_01625 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
QWT86594
LinkDB
All DBs
Position
330485..332689
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEQIIDNLLNGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVA
PESLIKDDYLDFLKEVKISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIANVPVIALTA
TATPKVQDDIQKTLGMTNALVFKESFNRPNLYYEVCPKINVDKEIVKFINQHKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGESFDPVNGDGAKMCDNSSNPPKLKDATADLKKA
LELISDTGEKFKSKDLISVIVGKENAVTKSYKLEQSSHFGFGKDEKDNYWKTILRQATVQ
NFLQKDIETYGVLKITEKGKSVLNGKSKDIFLIAEDREFDLTQAKAESDQVQQQAGGGLD
QNLFNLLKELRKKVAKKHGIPPYTVFMDPSLEDMTVQYPISVDEITKIYGVGEGKAKKYG
KEFADYIKTYVEDNNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMDE
LLKEMERIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMNESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgaattgaaaaagtattttgggttttctaca
tttaagggccagcaggaacagattatagataacctattgaatgggaaggatatatttgtt
ttaatgcctacaggtggcggaaaatcattatgttaccagcttccggctcttatttcggaa
ggaacagcaatagtagtttcgcccttaatagcgttgatgaaaaatcaggtagatgccgtg
aacggcctttcatctgatgatggggtagcacacgtactgaattcatcattaaacaaaacg
cagaccaaacaggtttttgacgatatcaaaagcggcaaaaccaaacttctgtatgtagct
cctgaatcattaattaaagatgattacctggattttttgaaagaagtgaaaatttctttc
tttgctatcgacgaggctcactgtatttcagagtggggacatgatttcagaccggaatac
agaaatctgaaacagattattgacaaaatcgccaatgtaccggtgattgctttaacggct
actgctactcctaaggttcaggatgatatccagaaaactttaggaatgaccaatgcattg
gtatttaaagaaagttttaaccgtcctaatctatattatgaagtatgtcctaaaatcaat
gtagataaggaaatcgttaaatttatcaatcagcataaagggaaatcaggaattgtttat
tgtctgagccgtagaaaagtggaagaatttgcccagcttctgcaggtaaatggcatcaac
gctctaccttatcatgccggtcttgaccaaaaagtgagagtagcgaatcaggataaattc
ctgatggaagaagtagatgtaattgtggctaccattgccttcgggatgggaattgataaa
ccggatgtccgttttgtcattcattacgacttcccgaaatcattggaaagctattatcag
gaaaccggaagagcgggaagagatggaggcgaaggtcattgtctggcattctatgatcca
aaggatatcgaaaaactggagaaattcctggctcaaaaacccgtttcagaaagagagatc
ggattacagcttttgaatgaagtggtaggttatgccgaaacttccatgagcagaagacaa
tatattctatactattttggagaaagtttcgatccggtaaacggagacggagccaagatg
tgtgacaattcatccaatccaccaaaattaaaggatgctacagcagatttaaaaaaggcg
ctggagctgatcagtgatacaggagaaaaattcaaatctaaagacctgatttccgttatc
gtaggaaaagaaaatgcggtaacaaaatcttataagctggaacaaagttctcattttggt
tttgggaaagacgaaaaagataattactggaaaacaattttgagacaggccactgttcag
aattttttacagaaagatattgaaacctacggggttttaaaaattacagagaaaggaaaa
agtgtactgaatggtaaatctaaagacatctttttaattgctgaagaccgtgaatttgat
cttactcaggcaaaagctgagagcgaccaggtacagcagcaggctggaggagggctggat
cagaaccttttcaacctgttgaaagaattaagaaagaaagtagccaaaaaacacggaatt
ccaccatacaccgtatttatggatccaagtttggaggatatgacggttcagtatccaata
agtgtagatgagatcaccaaaatctatggtgtaggtgaaggaaaagccaaaaaatatggt
aaagaattcgcagattacatcaaaacatacgtagaagataacaatatcgaacgtactcag
gatatggtattaaaacaggtggccaataaatccagccataaagttttcatcatccagagc
actgataaaaagattgaccttgaagatatagcaagagctaaaaacctttctatggatgaa
cttcttaaagaaatggaaagaattgtctatcagggaacaaaactgaatatcgattactat
attgaagataattttgatgaagacattgtagacggattcatggaattcatgaacgaatct
gaaagcgacagtatgaaagtattgctggatgaattcggggatgaattatctgatgaagaa
gtaagaatgttgagaattaaattcatcagtgacgtagcaaattaa
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