Chryseobacterium sp. PCH239: KBP46_08800
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Entry
KBP46_08800 CDS
T11096
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrh Chryseobacterium sp. PCH239
Pathway
chrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP46_08800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrh03019
]
KBP46_08800
Enzymes [BR:
chrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KBP46_08800
Messenger RNA biogenesis [BR:
chrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KBP46_08800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
UvrD-helicase
Cas3-like_C_2
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWT87919
LinkDB
All DBs
Position
1936570..1937874
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AA seq
434 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILEGRDFLGCAQTGTGKTAAFSIPIL
QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALR
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQRRQT
LFFSATMPTEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILQND
ISDSVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGNSISFVDGLDLLNLKNTEKL
IGKKIPVIKDHPFHTDDLVAQKRDSNNKPVAAGGGKPKTGNGNNSRPNNNRKKPAAGASV
GFKKPKNKNFTRKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagaacctattgcaaaagcaattcaggaacaggga
tacacgactcctactcctatccaggaaagatctattcctgatatcctggaaggcagagac
tttttaggttgtgcgcaaacaggaacaggaaagacagcagctttttctatccctatttta
cagaatttatctaaaaataaaattcccaataaacatataaaagcgttaatccttactccc
accagagaactggcgattcagattgaggaaaatattaatgcttacggtaaatatcttccc
ttaaagcaacttgttattttcggaggagtaaaacaaggaaatcaggaagcagctttgaga
aagggtgttgatattctggtagcaactccgggaagacttctggattttattgcacaagga
atcatcagcctgaaaaatcttgagatttttgttcttgatgaggcagacagaatgctggat
atgggttttgtacatgatgtaaaaagaatcattaaacttttacctcagagaagacagact
ttattcttttcagcaacaatgccgactgaaattcagaaactggctaattcgatcctgaat
aatccggtaaaggtagaggtaactccggtttcttctactgcagatactatcaaacaatct
gtgtatttcgtagaaaaagacaacaaactgaatttgctttctcatattcttcaaaatgat
atttcagactctgtattggtttttgcaagaacaaaacacggtgcagataagatttccaga
aagcttcagaaagacaatatctccgcagaagcgattcatggtaataaatctcagaatgcg
agacagaatgcgttgaacaattttaaatccggaaaaacaagagttcttgtagcgactgac
attgctgccagagggattgatattgatgagctgaaattcgtgatcaattttgagctttct
gatgtttctgaaacctatgtacacagaatcggaagaacaggaagagcaggagccgaaggt
aattctatatcttttgtagacggacttgatcttttgaacttaaagaatactgaaaaacta
attggaaagaaaattcctgtaatcaaggatcatccgttccatactgatgacctggtagca
cagaaaagggattctaataacaaacctgtagctgcagggggtggaaaacctaaaacaggt
aatggtaataattcaaggccaaataataaccgtaaaaagcctgcagcgggggcttcagta
gggtttaaaaaacctaagaataagaatttcaccagaaaaaaataa
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