Chryseobacterium sp. PCH239: KBP46_09170
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Entry
KBP46_09170 CDS
T11096
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
chrh Chryseobacterium sp. PCH239
Pathway
chrh03030
DNA replication
chrh03410
Base excision repair
chrh03420
Nucleotide excision repair
chrh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBP46_09170 (polA)
03410 Base excision repair
KBP46_09170 (polA)
03420 Nucleotide excision repair
KBP46_09170 (polA)
03440 Homologous recombination
KBP46_09170 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrh03032
]
KBP46_09170 (polA)
03400 DNA repair and recombination proteins [BR:
chrh03400
]
KBP46_09170 (polA)
Enzymes [BR:
chrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KBP46_09170 (polA)
DNA replication proteins [BR:
chrh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KBP46_09170 (polA)
DNA repair and recombination proteins [BR:
chrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KBP46_09170 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KBP46_09170 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
DUF2202
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QWT87975
LinkDB
All DBs
Position
complement(2022835..2025669)
Genome browser
AA seq
944 aa
AA seq
DB search
MDATQDKRLFLIDAYAMIFRGYYALIRNPRLTSKGLDTSAIFGFTNSLIELIRREKPTHL
AVVFDVGQASVRTDDFSEYKANRSETPEAIKIAIPYIHKILEAMHIPILGVEGYEADDVI
GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEIDDP
KQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGSIENLLANTDKLKGKLKEKVEASA
ERGIMSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFDEIEFRRLYENLYRAFAPAAV
ETVVVSEVEVKQTPAGTEVKGQVMQLDLFANFEELEQATSTKSTIENNDHLYQFINNPKA
QKKLVDNLLQQKVVCFDTETTSLNELEAELVGMSFSYKKGLAYYIPLSENREEVLQTMEI
FRPFFEKEDLLKIAHNLKYDYKVLKQYDITVKGAMFDTMIAHYLLNPDGRHGMDYLSEVY
LNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADITFQLYELFAPQLKKENLEEL
FFNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKQLETKIFELSEEEFNMNSPKQ
LGEILFEKLQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDAL
PSQIEKKDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTVRGQQIRGAFVSGEGKKIISA
DYSQIELRLIAEISGEDNMIKAFQDGEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGI
IYGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVNKARQVGYVETILGRKRH
LKDINSNNFVVRGHAERNAVNAPVQGSAADVVKLAMIKIDRELEEQQLKTKMLLQVHDEL
VFESPVDEIDTASKLIKTEMESALKTQVPLLVEIGVGDNWLEAH
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaacacaagataaaaggctgtttctcatcgatgcttatgcgatgattttcaga
ggatattacgcattaatcaggaatccgagacttaccagcaaaggtctggatacttctgcc
atctttggttttaccaattctttgatcgaattgatcagaagagaaaaaccaacacacctg
gcagtagtttttgatgttggacaggccagtgtaagaactgatgatttctcagaatataaa
gccaacagaagcgaaactcccgaagcaatcaaaattgcgattccatatattcacaaaatt
ctggaagcaatgcacatcccgattcttggggtggaaggatatgaagccgatgatgtcatt
ggaactatcgcatgcaaagcagaaaaagaaggatataccactttcatggtgacgccggat
aaagattttgcacagctggttaccgataaaattaaaatttataagccaggtttaaaaggt
ggcgacattgaaattttaggagtagaagaagtaaaggcaaaatatgagattgatgatcct
aagcaggtgattgatttccttgctatgatgggagatgcagtagataatatccctggatta
gaaggggtaggagaaaaaacggctatgaaattcctgaaagaattcggcagcattgaaaat
ttattagccaatacggataaactgaaaggaaaactgaaagaaaaagtagaagcttccgca
gaacgtggtattatgtctaaaaaactggcaaccattatttgtgacgctcctgtagaattt
catcaggaacaatacgatttggaaactccggattttgaaaaagtaaaagaggtctttgat
gaaatagaattcagaaggttatacgaaaacctttacagggcttttgctcctgcggctgta
gaaacagtggttgtaagtgaagtagaagtaaagcagacaccggccggaaccgaagtaaaa
ggacaggtgatgcagcttgacctttttgccaattttgaagaactggaacaggctacttct
acaaagtcaacgattgagaataatgatcacctttatcagtttatcaataatccgaaagct
cagaaaaaactggtagacaacctgctgcagcagaaagtagtatgtttcgatacggaaacg
acatcattaaacgaactggaagcagaactggtaggaatgagcttctcttataaaaaagga
cttgcctactacattcctctctctgaaaacagagaagaagtgttgcagaccatggagatt
ttcagaccgtttttcgaaaaagaagacctgcttaaaattgctcacaatctaaaatacgat
tataaagttttaaaacagtacgacatcaccgttaaaggggctatgttcgataccatgatt
gcccactacctgctgaatccggatggaagacacgggatggattacctttcagaagtatat
ctgaactataaaccggtatccattgaaaccatcatcggaaaaaaagggaaaaaacagggg
aatttcagagatgctgatctgagaacgcagacagactacgcggcggaagatgcagacatc
actttccaactgtatgaacttttcgcaccgcagctgaaaaaagaaaacctggaagagctt
ttctttaatattgaaatgcctctgatggaagtacttgcaaaaatggaactttcagggatt
tctttggatgaaaaatggttggcacaggaaagtgttgaccttgaaaatgatctgaaacag
ctggaaacaaagatttttgaactttcagaagaagaattcaatatgaattcccctaaacag
ttgggagaaattctttttgaaaaattacagctggatcccaaagccaaaaaaacaaagaca
ggacaatatgcaacctcagaagatgttcttcaaaaattaagttcaaaacatgaaatcatc
aagcatatcctggaatacagaacctatcagaaattaaaatcaacttatgtggatgcattg
ccttcacagattgagaaaaaagataacagagtacataccaacttctcacagactacagct
gctacaggccgtttggcgagtgtaaaccctaacctgcagaatattccgatccgaacggta
aggggccagcagatccgtggagcatttgtttccggagaagggaagaagattatttctgcc
gattactctcagattgaacttcgtttgattgctgagatttccggagaggataatatgatc
aaagcttttcaggatggagaagatatccacgcttctaccgctgcaaaactctttaaaatt
cctttggctgaggtatccaaaacccagagaagtcaggctaaaaccgtaaactttggaatt
atctatggacaaggagcttttgctttggcagaacaaaccggattatcccgtacagaagcc
aaacagatgatcgaagcttactttgaaacctatccgaaactgaaggagtacatggctgag
caggtgaacaaagcacgccaggtaggatatgttgaaactattttaggaagaaaacgtcat
ttgaaagatattaattccaataattttgtggtaagaggtcatgcggaaagaaatgctgta
aacgcaccagttcagggaagtgcagcagatgttgtaaagcttgccatgattaaaatagac
agagaacttgaagagcaacagcttaaaacaaagatgctgcttcaggtacatgacgaattg
gtgttcgaatctccggtagatgagattgatacagcctcaaaactaatcaaaactgaaatg
gaaagtgccctgaaaacacaggttcctttattggtagaaattggagtaggagataactgg
ttagaagcacattaa
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