Chryseobacterium sp. PCH239: KBP46_12500
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Entry
KBP46_12500 CDS
T11096
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
chrh Chryseobacterium sp. PCH239
Pathway
chrh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KBP46_12500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrh03021
]
KBP46_12500
03400 DNA repair and recombination proteins [BR:
chrh03400
]
KBP46_12500
Enzymes [BR:
chrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KBP46_12500
Transcription machinery [BR:
chrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KBP46_12500
DNA repair and recombination proteins [BR:
chrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KBP46_12500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QWT84344
LinkDB
All DBs
Position
complement(2698263..2699258)
Genome browser
AA seq
331 aa
AA seq
DB search
MAILQFIKPDKVILLNSDEFKGQFEFRPLEPGFGLTIGNALRRVLLSSLEGYAISSIKIE
GVEHEFSTIPGVIEDVTEIILNLKQVRLKAAAEGQANEQVVAKVSGQTVITAGDLGKSIN
GFEVLNPDLVICNLNSDVTFEITFNIEKGRGYVPSEQNKSNNAPIGTIAIDSIFTPIKKV
QYSIENYRVEQKTDYEKLVLDIETDGSISPQNALTEASKILIYHFMLFSDERITLETEAV
KASIQYDEETLHTRQLLKSKLADMDLSVRALNCLKAAEVETLGELVSYSKSDLMKFRNFG
KKSLTELEELVHSKGLNFGFDVAKYKLDADK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttacaattcataaaacccgataaagtaattttacttaactctgatgaattt
aaaggtcaatttgaattcagacctttagaaccaggtttcgggcttacaatcggtaatgct
ttgagaagagtgttgctttcttctctggaaggatacgctatttcatctatcaaaatagaa
ggtgtagagcacgaattttcaactattccaggagtaatcgaagacgttaccgaaattatt
cttaaccttaagcaggtaagattaaaagctgcagcagaaggccaggctaacgagcaggtt
gttgctaaagtttcaggtcaaacggttattactgctggtgatttaggaaagtctatcaac
ggatttgaggttttgaacccagatttagtgatctgcaacctaaacagtgatgtaactttc
gaaattactttcaatattgaaaaaggaagagggtatgttccttctgaacaaaataagtca
aacaatgctcctattggaactattgctattgactctattttcacgccgatcaagaaagta
caatacagcattgaaaattatcgtgtagagcaaaaaacagactacgaaaaacttgtatta
gatatagaaactgatgggtctatcagccctcagaatgctttaactgaagcttctaagata
ttaatttatcacttcatgttattctccgatgagagaatcactcttgaaactgaagctgta
aaagcatctatccagtacgatgaagaaactcttcatacaagacaacttcttaagtctaaa
ttagcagatatggatctttctgtaagagcccttaactgtctaaaagcagctgaagtagaa
actcttggagaactggtttcttacagtaagtctgatttgatgaaattcagaaattttggt
aaaaaatctttgacagaactagaagaattagtgcattcaaaaggtcttaacttcggtttc
gacgttgcaaaatataagttagacgctgataaataa
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