Chryseobacterium sp. PCH239: KBP46_13545
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Entry
KBP46_13545 CDS
T11096
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chrh Chryseobacterium sp. PCH239
Pathway
chrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP46_13545 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrh03021
]
KBP46_13545 (rho)
03019 Messenger RNA biogenesis [BR:
chrh03019
]
KBP46_13545 (rho)
Transcription machinery [BR:
chrh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KBP46_13545 (rho)
Messenger RNA biogenesis [BR:
chrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KBP46_13545 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Rho_N
S1CSD-TOTE-2
PAT1
Motif
Other DBs
NCBI-ProteinID:
QWT84532
LinkDB
All DBs
Position
complement(2920332..2922167)
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AA seq
611 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARTSNENDKIFAILDFQASNPKVAKDYFNATETA
SVNTEEAPAEKPAKAPAKKAAPKKTAAKPKAPAKAPVETKTEEIVEEKVAASEDIKPEEP
KAETTVATVTEESAATAQAKKKRKRVSTNSGNVEVSQERTETPKNTEPQEPVQAEEKPTN
PQQPQANRPQKGHNHPQNSGNQHKNQNQQHQHQQHQNQNQNQNRHSEKAEEQNEHKKEFN
FDGLVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNYGLKTGDTVKGIVRLP
KEGEKYFSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGSNSTISTRIVDLFAP
IGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERSVNAEV
IASTFDEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSG
GVDANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDR
KIANRRIYPAIDLISSSTRRDDLLLDEVTSQRMWIFRKYLSEMNPVEAMEFVNKNIKGTL
NNEEFLMSMNK
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaaa
gatttgggcgttaaagttgcaagaaccagcaatgaaaatgacaagatctttgctattctt
gactttcaggcttctaaccctaaagttgcaaaagattatttcaacgccacagaaaccgcc
agtgtaaatactgaagaggctccagcagaaaaacctgccaaagccccggcaaaaaaagct
gccccgaaaaaaacagcagccaagccaaaagcaccagcaaaagctccggtagaaactaaa
acagaggaaatagtagaagaaaaggtagctgcttctgaagacataaaaccggaagaacca
aaagctgaaaccactgtagcaacagtaacagaagaatcagcagcaactgctcaggcaaaa
aagaaaagaaaaagagtttctaccaattcaggaaatgtagaagtatctcaggaaagaact
gaaactccaaaaaacacagaacctcaagagcctgttcaggccgaagaaaagcctactaat
cctcaacaaccacaggcaaacagaccccaaaaaggacacaaccatccacagaacagtgga
aaccaacataaaaatcaaaaccaacaacatcagcatcagcagcatcaaaaccaaaatcag
aatcaaaacagacattctgaaaaggcagaggagcagaacgagcataaaaaagaattcaat
ttcgatggattggtaagtattgaaggtgttttggaaatcttacctgataactacggattt
ttacgttcctcagatttcagctatatctcttctccggatgatgtgtatgtatctacagca
cagatcaggaattatgggctaaaaaccggagatacagtgaaaggaattgtaagacttcca
aaagaaggagagaaatacttttcattattaaaacctacagaagtaaacggacgtgatctt
gcattcatcaaagaccgtgtagcttttgaatatcttactccgcttttcccggaagaaaaa
ttcaatttggcaggaagcaattctaccatttctaccagaattgtagatttatttgcacct
attggaaaaggtcagagagcaatgatcgttgcacagcctaaaacaggtaagacgatgtta
ctgaaagatattgctaattctattgcagccaatcacccggaagtatatatgatggttctt
ctgattgatgaacgtccggaagaggttactgatatggaaagaagcgtaaatgcagaagta
attgcctctacatttgatgaagcagcagaaaaacatgtgaaagtagccaaccttgttctt
gcaaaagcacaaagaatggtagaatgcggacatgatgtagtgatcttactggattctatt
acaagattagcaagagcttacaacaccgtaacgcctgcatctggtaaagtactttccggt
ggagtagatgccaatgctcttcacaagccaaaaagattcttcggtgcggcaagaaaaatt
gaaggaggaggatctctgacaatcattgcgactgcattaattgatacaggatctaaaatg
gatgaagttatctttgaagaattcaaaggtacgggtaacatggaacttcagctggacaga
aaaattgccaacagaagaatttatcctgctattgatcttatttcttccagtacccgtaga
gatgatctgcttctggatgaagtaacttctcagagaatgtggatcttcagaaaatatctt
tctgaaatgaatcctgtagaagctatggaatttgttaataaaaacatcaaaggaactctg
aataatgaggaattcctgatgtctatgaataaataa
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