Chromobacterium phragmitis IIBBL 112-1: DK842_03680
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Entry
DK842_03680 CDS
T05549
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03030
DNA replication
chri03430
Mismatch repair
chri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DK842_03680 (holB)
03430 Mismatch repair
DK842_03680 (holB)
03440 Homologous recombination
DK842_03680 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chri03032
]
DK842_03680 (holB)
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_03680 (holB)
Enzymes [BR:
chri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DK842_03680 (holB)
DNA replication proteins [BR:
chri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DK842_03680 (holB)
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DK842_03680 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AXE29093
LinkDB
All DBs
Position
complement(737234..738238)
Genome browser
AA seq
334 aa
AA seq
DB search
MLYPWQDGDWRRLAAERERMPGAWLFTGGAGIGKRAFAEHLAQSLLCESPAAGHQPCGQC
QGCRWFASGTHPDFRRLSPFADEEDEGKEAKTTRKLPQIKIEAVREVIDFAHLTAHRAGR
RVILVEPAENLNLAAANALLKILEEPPESVLFLLVSHSPQRLLPTIRSRCRQFALTRPAG
SAALAWLQEQGVANAEVELAHNGGAPLFDHDPELAALRGQFVRGLGQPSFAGMLQLAELA
DKNKQLSLLQPLSWLQKWLHDLAALCLAGRVRYYPDQERTLAALAPRCDAIQLMACQQAL
TALAPFSQHTLNNRLQLEAVLMDYLKIFAGGKAG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatccatggcaggacggggactggaggcggcttgccgccgagcgcgagcggatg
ccgggcgcctggctgttcaccggcggcgccggcatcggcaagcgggccttcgccgagcat
ctggcgcagtcgctgttgtgcgaaagcccggccgcaggacaccagccttgcggccagtgc
cagggctgccgctggttcgccagcggcactcatccggatttccgccgcctgtcgccgttc
gccgacgaggaagatgagggcaaggaggccaagaccacgcgcaaactgccgcagatcaag
atcgaggcggtgcgcgaggtgatcgatttcgcccatctgaccgctcaccgcgccggccgg
cgggtcattctggtggagccggccgagaacctcaatctggccgccgccaacgccttgctg
aaaatcctggaggagccgccggagtcggtgctgttcctgctggtgtcgcactctccgcaa
cgcctgctgccgacgatacgcagccgctgccgccagttcgcgctgacccggccggccggg
agcgccgccctggcttggttgcaggaacagggcgtggccaatgccgaggtcgagctggcg
cacaacggcggcgcgcccttgttcgatcacgaccccgagctcgccgcgctgcgaggccag
ttcgtccgcggcctgggccagcccagtttcgccggcatgctgcaactggcggagctggcg
gacaagaacaagcagctgtcgttgctgcagccgttgtcctggctgcagaaatggctgcat
gacttggcggcgctgtgcctggccggccgggttcgctattatccagatcaggaaaggacg
ctggccgcgctggcgccgcgctgcgacgccatccagctgatggcgtgccagcaggcgctg
accgcgctggcgccgttttcgcaacatacgctgaacaaccgcctgcagctggaggcggtg
ttgatggactacttgaagatcttcgccggcggcaaggccggctga
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