Chromobacterium phragmitis IIBBL 112-1: DK842_05420
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Entry
DK842_05420 CDS
T05549
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03030
DNA replication
chri03410
Base excision repair
chri03420
Nucleotide excision repair
chri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DK842_05420
03410 Base excision repair
DK842_05420
03420 Nucleotide excision repair
DK842_05420
03440 Homologous recombination
DK842_05420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chri03032
]
DK842_05420
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_05420
Enzymes [BR:
chri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DK842_05420
DNA replication proteins [BR:
chri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DK842_05420
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DK842_05420
NER (nucleotide excision repair)
GGR (global genome repair) factors
DK842_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AXE29389
LinkDB
All DBs
Position
complement(1102570..1105368)
Genome browser
AA seq
932 aa
AA seq
DB search
MKTLLLIDGSSYLYRAFHAMPDLRSPDGRPVGAVYGMVNMLRRLEKEVEFDYSACVFDAK
GKTFRDDLYPEYKANRPSMPEELASQITAVHDVVQASGWPMLAVPGVEADDVIGTLARLG
AAAGMKVIVSTGDKDMAQLVTADVTLVNTMTNELLDEAGVKEKFGVPPNRIIDYLTLIGD
KVDNVPGVDKCGPKTAVKWLEEYGSLDAIVAQADRVGGKVGENLRAALDWLPMGRRLITI
DCEVNLATDLPHGLPGLQHGQKDKPRLAELFQDLGFRTFYREVTAGSEMPAVAQRGEDAP
AAPRGDQAQGDMFAEPAAAPSAQAVPAEGALARHYETILTDAQLDAWLAKLAAAKVVSFD
TETTSLDPMQARIVGVSFSVEAGQAAYLPLGHHYAGAPEQLPLDAALARLKPWLEDARQK
KCGQNLKYDSHVLANHGIALRGIVDDSMLASYVLESHQRHNMDDLARRHLGEDTVSYEDI
CGKGAKQIGFGEVDVDIAANYAAEDADITLRLNQHFAGQLSGDLEKVYRDIELPVAEVLF
KMERHGVLIDRDKLAAQSHQLGSQMLELEEQAYELAGQPFNLNSPKQLQEILFGKLAIPT
KGVKKTPSGGYSTDESVLEQLALDHPLPKRILEYRGLAKLKSTYTDKLPTLIYPQTGRVH
TTYAQAVAITGRLSSNDPNLQNIPVRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAH
LSDDEGMLKAFASGEDIHRATAAEVFGVDLGAVTSDQRRAAKAINFGLIYGMSAFGLAAQ
LDIERSAAQQYIDRYFMRYPGVAEYMQTTREKAREQGYVETVFGRRLYLPDIKLSNPGRR
AGAERAAINAPMQGTAADLIKLAMIAVQDWLERDGLQSKLIMQVHDELVLEVPQAELERV
KRKLPEIMAEAAKLKVPLLAEVGFGDSWEAAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattgttattgatcgacggctcttcttatttgtaccgcgcctttcacgcgatg
cccgatttgcgttctccggatggccgcccggtgggggctgtctatggcatggtcaacatg
ctcaggcggctggagaaagaggttgagttcgattatagcgcctgcgtcttcgacgcgaag
ggcaagactttccgcgacgacctgtaccccgaatacaaggccaaccgcccgtcgatgccc
gaggagctcgcttcccagattacggcggtccacgacgtggtgcaagcttccggctggccg
atgctggcggtgccgggcgtggaggccgacgacgtgatcggcacgctggcgcgcctgggg
gcggcggccggcatgaaggtgatcgtctccaccggcgacaaggacatggcgcagctggtg
acggcggacgtcactcttgtcaacaccatgaccaacgagctgctggacgaagccggggtg
aaggaaaaattcggggtgccgccgaaccggatcatcgactacctgaccctgatcggcgac
aaagtggacaacgtgcccggcgtcgacaagtgcgggccgaagaccgcggtgaagtggctg
gaggagtacggcagcctggacgccatcgtcgcccaggccgatagggtcggcggcaaggtg
ggcgagaacctgcgcgcggcgctggactggctgccgatgggcaggcggctgatcaccatc
gattgcgaggtgaacctagcgacggacctgccgcatggcctgccgggcctgcagcatggg
cagaaagacaagccgcgcctggccgagctattccaggacctgggtttccgcaccttctac
cgcgaggtgaccgcgggctcggagatgccggcggtcgcccagcgcggcgaggacgcgccg
gccgccccgcgcggcgatcaggcccagggcgacatgttcgccgagccggccgccgcgcca
tcggcccaagccgtcccggctgaaggcgcgctggcgcgccattacgaaaccattctcacc
gacgcgcagctggatgcctggctggccaagctggcggcagccaaggtggtgtccttcgac
accgaaaccaccagcctggacccaatgcaggcgcgcatcgtcggcgtcagcttctcggtg
gaggccggccaggctgcctacctgccgctgggacaccattacgccggcgcgccggaacaa
ttgccgctggacgctgccctggccaggctgaagccgtggctggaggacgcccgccagaag
aagtgcggacagaacctgaagtacgacagccacgtgctggccaatcacggcatcgccctg
cgcggcatcgtcgatgattcgatgttggcctcctacgtgctggaaagccaccagcgccac
aatatggacgacctggcgcgccgccatctgggagaggacaccgtcagctacgaggacatc
tgcggcaagggcgccaagcagatcggtttcggcgaggtggacgtcgacatcgccgccaat
tacgcggccgaagacgccgacatcacactgcgcttgaaccagcacttcgccggccaattg
agcggcgatctggaaaaggtctaccgcgacatcgagctgccggtggccgaggtgttgttc
aagatggaacggcatggcgtgctgatcgaccgcgacaagctggccgcgcagagccaccag
ctgggcagccagatgctggagctggaggagcaggcttacgaattggccggccagcctttc
aatctgaactcgcccaagcagctgcaggaaatcctgttcggcaagttggcgatcccgacc
aagggggtcaagaagacgccgagcggcggttattccaccgacgagtcggtgctggaacaa
ctggcgctggaccacccgttgcccaaacgcatcctggaataccgcgggttggccaagctg
aagtccacgtataccgacaagctgccgacgctgatttatccacagaccggccgcgtgcac
acgacttatgcacaggcggtggcgatcactggccgtttgtccagcaacgatcccaatctg
cagaacatcccggtgcgcaccgccgagggccgccgcgtgcgcgaagccttcatcgcgccg
gccggctggcagatcgtgtcggccgactattcgcagatcgagctgcgcatcatggcccac
ctgtccgacgacgagggcatgctgaaggccttcgccagcggcgaagacatccaccgcgcc
accgcggcggaggtgttcggcgtcgatctcggcgcggtcacgtcggaccagcgccgcgcg
gccaaggcgatcaacttcggcctgatctacggcatgagcgcgtttggcctcgccgcccag
ctggacatcgagcgcagcgccgcccagcagtacatcgaccgctacttcatgcgctacccg
ggcgtggccgaatacatgcagaccacgcgcgagaaggcgcgcgagcagggctacgtggaa
accgtgttcggccgccgcctgtatttgccagacatcaagctcagcaatccgggccgccgc
gccggcgccgaacgcgcggcgatcaacgcgccgatgcagggtaccgcggccgacctgatc
aagctggcgatgatcgcggtgcaggactggctggaacgtgacggtttgcaaagcaagctg
atcatgcaagtgcacgacgaactggtgctggaggtgccgcaggccgagctggagcgggtc
aagcgcaagctgcctgagatcatggccgaggcggccaaactcaaggtgccgttgctggcc
gaggtcggtttcggcgatagctgggaagctgcgcactga
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