Chromobacterium phragmitis IIBBL 112-1: DK842_06930
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Entry
DK842_06930 CDS
T05549
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK842_06930 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chri03019
]
DK842_06930 (recQ)
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_06930 (recQ)
Enzymes [BR:
chri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK842_06930 (recQ)
Messenger RNA biogenesis [BR:
chri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK842_06930 (recQ)
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DK842_06930 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AXE29652
LinkDB
All DBs
Position
complement(1467294..1469090)
Genome browser
AA seq
598 aa
AA seq
DB search
MHDAVSILNHIFGYPEFRGQQQEIVEQVAHGGHALVLMPTGGGKSLCYQIPALLRDGVAI
VVSPLIALMQDQVATLQELGVAAACLNSATGPDEARDIARQARAGTLDLLYVAPERLLTP
RFQEFLASLKVALFAIDEAHCVSHWGHDFRPEYQQLGMLAEQFPLVPRIALTATADEQTR
LDIIHYLKLAEARVFLSSFDRPNLFYQVVEKHNAKKQLLDFIRQEHQGATGIVYCLSRKR
VEDTAQWLRENGIEALAYHAGMSHAEREANQRLFLREDGIVMVATVAFGMGIDKPDVRFV
AHIDMPKSPENFYQESGRAGRDGLPSASWLCYGFNDVVQLRQMIEGGEMAELQKQVELSK
LDAMLAFCETAGCRRQHILAHFGEASKPCGHCDNCLHPPITYDATEPVRKLLSCIYRVGQ
RFPTGHVIDVLLGRQNPSIGHHRHDQLSTYGIGKDMNQRWWRSIVRQLVARQLVQVDIAR
GQSLVLTDACRPLLKGEQSIYLRPLADEKKSRGSGGADRWLRTEREERLWQALRRWRRQV
ADEHNVPAYAVFSDRTLRDLVEKRPDSPAGLQRIYGLGELKLARYGEALLNCLREAQE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcagtctccatcctcaatcatattttcggctatccggaattccgcgggcag
cagcaggagatcgtcgaacaggtggcccacggcggccacgcgctggtgttgatgcctacc
ggcggcggcaagagcctgtgctaccagatcccggctttgctgcgcgacggcgtcgccatc
gtggtgtcgccgctgatcgcgctgatgcaggaccaggtggcgacgttgcaggagctgggc
gtggcggccgcttgcctgaattccgccactggcccggacgaggcgcgcgacatcgcccgc
caggcccgagccggcacgctggacctgctgtatgtggcgccggagcgcttgctgacgccg
cgctttcaggaatttttggctagcttgaaagtcgcgttgttcgcgatcgacgaagcgcat
tgcgtcagccattggggacacgatttccggccggaataccagcaactgggcatgctggcc
gaacagttccctctggtgccgcgcatcgcgctgaccgccaccgccgacgagcagacccgg
ctcgacatcatccattatctgaagctggccgaggccagggtgttcctgtccagcttcgac
cggcccaacctgttctaccaggtggtggagaagcacaacgccaagaagcaattgctggac
ttcatccgccaggagcatcagggcgccaccggcatcgtttactgcctgtcgcgcaagcgg
gtggaggacaccgcgcaatggctgcgggagaacggcatcgaggcgctggcctaccatgcc
ggcatgagccacgcggagcgcgaggcgaatcagcggctgttcctgcgcgaggacggcatc
gtgatggtggccacagtggccttcggcatgggcatcgacaagccggacgtgcgcttcgtc
gcccacatcgacatgcccaagagcccggaaaacttttatcaggagtcgggccgcgccggc
cgcgatggactgccgtcggccagttggctgtgctacggattcaacgacgtggtgcaactg
cggcagatgatagaaggcggcgagatggccgaattgcagaagcaggtggagctgtccaag
ctggacgcgatgctggcattttgcgaaaccgccggctgtcgccgccagcacatcctggcg
cacttcggcgaggcgagcaaaccctgcggccattgcgacaactgcctgcatcctcccatc
acttacgacgccaccgaaccggtgcgcaagctgctgtcctgcatctatagagtggggcaa
cgcttccccaccggccacgtcatcgatgtgctgctgggacggcagaatccgagcatcggc
caccatcgccatgatcagctcagcacctacggcatcggcaaagacatgaaccagcgttgg
tggcgctccatcgtccgccagctggtggcgcgccagttggtgcaggtggatatcgcccgc
ggccagtcgctggtgttgacggatgcctgccggcctctgttgaagggcgagcagagcatc
tatctgcggccgctggccgacgagaagaagtctcgcggcagcggcggcgccgaccgctgg
ctgcgcaccgagcgcgaggagcggctgtggcaggcgctgcgccgctggcgccggcaggtg
gccgacgagcacaatgtgccggcctacgcggtgttttcagaccgcacgctgcgcgatctg
gtggaaaagcggccggacagcccggccggcctgcagcgcatttacggtttgggcgaactg
aaactggcgcgctatggcgaggcgctcttgaactgcttgcgcgaggcgcaggaatag
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