Chromobacterium phragmitis IIBBL 112-1: DK842_08330
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Entry
DK842_08330 CDS
T05549
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03420
Nucleotide excision repair
chri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK842_08330
03430 Mismatch repair
DK842_08330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_08330
Enzymes [BR:
chri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK842_08330
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DK842_08330
MMR (mismatch excision repair)
Other MMR factors
DK842_08330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
AAA_11
RskA_C
Motif
Other DBs
NCBI-ProteinID:
AXE29893
LinkDB
All DBs
Position
complement(1754923..1757064)
Genome browser
AA seq
713 aa
AA seq
DB search
MSDLLAGLNPEQKRAVTWPAKSALVLAGAGSGKTRVLTTRIAWLLSTDQTSPAGILAVTF
TNKAAREMQTRLSAMAPVNVRNMWIGTFHGLCNRFLRIHYRDAGLPQTFQILDSADQQAA
IKRLLKSLELSDEKYPPRAVQSFINGSKEAGVRAESLPPALNPYEAKLVELYAAYDAQCR
REGVVDFAELLLRSYELLSRNEALRAHYSNRFSHILVDEFQDTNRLQYAWLKLLAGEHGA
LFAVGDDDQSIYAFRGAEVGNMRALLSDFHVAEPVRLEQNYRSMGNILNAANALIEQNDG
RLGKSLWTDAGEGDKIRFFQSGSDGEEAEFIVDEAKNLHRDGLALSDIAVLYRSNAQSRI
LEHVLVNAQIPYRIYGGLRFFERQEIKHALAYLRLVANPDDDNALLRVINVPARGIGARS
VENLQAVSREQGVTLWQAACQSGGGRTAAKIGEFVLLIEKMREQSRDFSLAETISLAIDR
SGLRDMYEQDKKDGEERLANLDELVNAAASFLPDQPEQALTEFLSAASLEAGEHQADAGS
DALQLMTVHAAKGLEFDAVFVSGLEEGLFPHENSVMDGKGLQEERRLMYVAITRARKRLY
LSSAQSRMLHGQSRYPIPSRFIDEIPAELIHSLSATVKSPVAPQQARRAAAMPRRQADNA
YGLSIGQAVSHAKFGVGVVIDAEGNGEDVRLQINFAEHGVKWLDLRYAKLNPA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatctgttagccggcctgaatcccgaacaaaagcgcgccgtcacctggcccgcc
aagagcgcgctggtactggccggcgccggcagcggcaagacccgggtgctgaccacccgc
atcgcctggctcttgtccaccgaccagacctccccggccggcatcctggcggtgaccttc
accaacaaggcggcgcgcgaaatgcagacccggctgtcggcgatggcgccggtcaatgtc
cgcaatatgtggatcggcaccttccacggcctgtgcaaccgcttcctgcgcatccactac
cgcgacgccggcctgccgcaaaccttccagatcctcgactccgccgaccagcaggccgcg
atcaaacgcctgctgaaaagcctggagctgtcggacgaaaaatacccgccgcgcgcggtg
caaagcttcatcaacggcagcaaggaagccggcgtgcgcgccgagtcgctgccgccggcg
ctgaacccctacgaggccaagctggtcgagctgtacgccgcctacgacgcccagtgccgg
cgcgaaggcgtggtggacttcgccgaactgctgctcagaagctacgagctgctgtcgcgc
aacgaggcgctgcgcgcgcactacagcaaccgcttctcccacatcctggtggacgaattc
caggacaccaaccgcctgcaatacgcctggctcaagctgctggccggcgagcacggcgcg
ctgttcgccgtcggcgacgacgaccagagcatctacgccttccgcggcgcggaggtcggc
aatatgcgcgcgctgctgtccgacttccacgtggccgagccggtgcggctggagcagaac
taccgctccatgggcaacatcctcaacgccgccaacgcgctgatcgagcagaacgacggc
cggctgggcaagagcctgtggaccgatgccggcgagggcgacaagatccgattcttccag
tccggcagcgacggcgaagaggccgagttcatcgtcgacgaggccaagaacctgcaccgc
gacggcctggcgttgtccgacatcgccgtgctgtaccgctccaacgcgcagtcccgcatc
ctggagcacgtgctggtcaatgcccagattccctaccgcatctatggcggcctgcgcttc
ttcgaacgccaggaaatcaagcacgcgctggcgtatttgcgtctggtggccaacccggac
gacgacaatgccttgctgcgcgtgatcaacgtgccggcgcgcggcatcggcgcgcgcagc
gtggaaaacctgcaagcggtcagccgcgagcaaggcgtcaccctgtggcaggccgcctgc
cagagcggcggcggccgcaccgccgccaagattggcgaattcgtcttgctgatcgagaaa
atgcgcgagcagagccgcgacttcagcctggccgaaaccatcagcctggcgatagaccgc
agcggcctgcgcgacatgtacgagcaggacaagaaggacggcgaggagcggctggctaac
ctggacgaactggtcaacgccgccgccagcttcctgcctgaccagccggaacaggcgctg
accgaattcctgtccgccgccagcctggaagccggcgagcaccaggccgacgccggcagc
gacgccttgcaactgatgacggtgcacgcggccaagggcctggagttcgacgccgtgttc
gtcagcggcctggaagaaggcctgtttccgcacgagaacagcgtgatggacggcaagggc
ctgcaggaagagcgccggctgatgtacgtggccatcacccgcgcgcgcaagcggctgtat
ctttccagcgcgcaaagccgcatgctgcacggccagagccgctaccccatcccgtcgcgc
ttcatcgacgagattccggccgaactgatccattcgctgtctgctacagtgaaatcaccc
gttgcgccgcagcaggcgcgtcgcgccgcagccatgccgcgccggcaggcggacaacgcc
tacggcctgtccatcggccaggcggtcagccacgccaagttcggcgtcggcgtggtgata
gacgccgagggcaacggagaagacgtgcgcttgcagatcaatttcgccgaacacggcgtc
aaatggctggatctgcgctacgcgaaactgaatccggcctga
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