Chromobacterium phragmitis IIBBL 112-1: DK842_08890
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Entry
DK842_08890 CDS
T05549
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chri03016
]
DK842_08890
Enzymes [BR:
chri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DK842_08890
Transfer RNA biogenesis [BR:
chri03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DK842_08890
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AXE29998
LinkDB
All DBs
Position
complement(1866321..1868195)
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AA seq
624 aa
AA seq
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MNVFYEESGNFKVGSIVSRSDASLQVDTQHGKRAKLKSANVFLEFSSPLADFLPATEKLA
ADIDLDFLWECSPDDEFGYQDLAADYFGHEPSAVEAAALISRLHGAPMYFYKKGKGRYKK
APQDALQAALAGIERKKREQEQIDGWVGELKAGSLPEAIRSQLMQLLWKPDKNTLEFKAF
DQASRELNLPPLRLADKVGGIPSVPDYLMAGFQMEFFPRGVGFGKYAPPSEPPELPVSSA
RAFSIDDANTTEIDDALSVEDLPNGNKRVGIHIAAPTLGVPLDSDIEKMVLSRLSTAYFP
GDKITMLPDDVVQAFTLQEGRDCPAFSLYVEVTPEFEPIAFENRIEKVHIGANLRHAELE
QVFNEETLANDPGVDYPFKRELVWLWQFAEALEKRRGKYDPTRPVQHDYNIDVADGIVSI
TIRKRGAPMDKLVSELMILANSEWGRMLAEADIPAMYRAQSMGKVRMTTRPEPHTGLGVA
QYAWSTSPLRRASDFINQRQLASMIRGEKPQFAQGDAMLFAILRDFDATYGGYLSFQDKM
EYYWCLKYLQQENITEPTAAVIKEDLVRIDGLPLRLRIPGLPELARGDRIQLSVVKVDLL
TQEVELRYIGRLDHVEEDLEDEEG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttttttacgaagagagcggcaatttcaaggttggcagcatcgtgtcgcgcagc
gacgccagcctgcaggtggacacccagcacggcaaacgcgccaaactgaagagcgccaac
gtctttctggagtttagttcgccgctggcggattttctgccggcgacggaaaagctggcc
gccgacatcgacctggatttcctgtgggaatgcagccccgacgacgaattcggctaccag
gatctggccgccgactacttcggccacgagccgtccgcggtggaggccgcggcgctgatc
agccgcctgcacggcgcgccgatgtacttctacaagaagggcaagggccgctacaagaag
gcgccgcaggacgcgctgcaggccgccctggccggcatcgagcgcaaaaagcgcgagcag
gagcagattgacggctgggtgggcgagctgaaagccggctcgctgccggaagccatccgc
tcgcaactgatgcagctgttgtggaaacccgacaaaaacacgctggaattcaaggccttc
gaccaggccagccgcgagctgaatctgccgccgctgcgtctggccgacaaggtgggcggc
attccgtcggtgccggactacctgatggccggcttccagatggagttcttccccagaggc
gtaggcttcggcaaatacgcgccgccgagcgagccgccggagctgccggtatcgagcgcg
cgcgccttctccatcgacgacgccaacaccaccgagatcgacgacgcgctgtcggtcgag
gatctgcccaacggcaacaagcgcgtgggcatccacatcgccgcgccgacgctgggcgtg
ccgctggactccgacatcgagaaaatggtgctgtcgcggctgtccacggcctatttcccc
ggcgacaagatcaccatgctgccggacgatgtggtgcaggccttcaccttgcaggaaggg
cgggattgcccggcattctcgctgtacgtcgaggtgacgccggaattcgagccgatcgcg
ttcgagaaccgcatcgagaaagtgcatatcggcgccaacctgcgccacgccgaactggaa
caggtattcaacgaggagacgctggccaacgatccgggcgtcgactacccgttcaagcgc
gagctggtctggctgtggcagttcgccgaggcgctggagaagcgacgcggcaaatacgac
ccgacgcgcccggtgcagcacgattacaacatcgacgtggccgacggcatcgtgtccatc
accatccgcaagcgcggcgcgccgatggacaagctggtgtccgagctgatgatcctggcc
aacagcgaatggggccggatgctggccgaagccgacatcccggccatgtaccgcgcccag
agcatgggcaaggtgcgcatgaccacccgccccgagccgcacacgggcctgggcgtggcc
cagtacgcctggagcacctcgccgctgcgccgcgccagcgacttcatcaaccagcgccag
ctggcgtccatgatccgcggcgaaaagccgcagttcgcccagggcgacgccatgctgttc
gccatcctgcgcgacttcgacgccacctacggcggctatctgtccttccaggacaagatg
gaatactactggtgcctgaagtatctgcagcaggaaaacatcaccgagccgaccgccgcc
gtgatcaaggaagacctggtccgcatcgacggcctgccgctgcgcctgcgcattccgggc
ctgccggaactggcccgcggcgaccgcatccagctgtcggtggtcaaggtggacctgctg
acccaggaggtggagctgcgctacatcggccgcctggaccatgtggaagaagacctggaa
gacgaagagggctga
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