Chromobacterium phragmitis IIBBL 112-1: DK842_09255
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Entry
DK842_09255 CDS
T05549
Name
(GenBank) very short patch repair endonuclease
KO
K07458
DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_09255
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
DK842_09255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vsr
Motif
Other DBs
NCBI-ProteinID:
AXE30069
LinkDB
All DBs
Position
1960255..1960776
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AA seq
173 aa
AA seq
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MADIVDKATRSRMMSGIRGKNTKPELLIRKALHARGFRYRLHNKNLPGKPDLVFPKYKAV
VFIHGCFWHGHDCHYFKVPQTRTAFWLEKINGNRERDTRQLMQLRLAGWRILVVWECATR
KKEPSGNDILIDCISNWLIMGTCDAHIEETGIQPLPCLTTESVIIQKALLPNT
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atggctgatatcgttgacaaggctacccgcagtcggatgatgtcgggtatccgtggcaag
aacaccaagcctgaattgttgatacgcaaggccttgcatgcgcggggctttcgttaccgg
ttgcacaacaagaatttgccaggtaagccggaccttgtatttcccaaatacaaggcggtg
gtgtttatccatggctgtttctggcatgggcatgactgccactatttcaaagtaccacaa
acccgtacggctttctggctggagaagatcaacggcaacagggaaagggatacccgacag
ctgatgcaattgaggctggcaggctggcgcattcttgtggtctgggagtgtgcaacacga
aagaaggaaccatcaggaaatgacatactgattgactgtatttccaactggttgataatg
ggtacttgtgacgcacatatcgaagagaccggcatccagcccctgccatgtttgacgacc
gaatcagtgattatacagaaggcgttgctgccaaatacctga
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