Chromobacterium phragmitis IIBBL 112-1: DK842_09960
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Entry
DK842_09960 CDS
T05549
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chri03032
]
DK842_09960
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_09960
Enzymes [BR:
chri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DK842_09960
DNA replication proteins [BR:
chri03032
]
Prokaryotic type
DNA Topoisomerases
DK842_09960
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DK842_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AXE30202
LinkDB
All DBs
Position
complement(2113143..2115452)
Genome browser
AA seq
769 aa
AA seq
DB search
MPTSLLIVESPSKAKTLKKYLGPDFEVLASYGHVRDLVPKNGAVDPEKDFAMKYQLIARN
SKHVDAIVSAVREADHVYLATDPDREGEAISWHLVQILNSKKLLKDKTAQRVVFHEITKN
AVLDAIQNPRDIAQDLVDAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC
ERENEIKAFVQQEYWSVHLDSHKSRTKFSAKLTQLAGKKLDQFDIPNEAEQASVLARLQG
LPATVGSIEKKKKSRSPAAPFTTSTLQQEAVRKLGMTTDRAMRTAQQLYEGMDIGQGTVG
LITYMRTDSVALANEAVEEIRGYIGLKWDADFLPKNPAVYKSKAKNAQEAHEAIRPTSIL
RTPEMVKPFLTTDQFKLYDMIWKRTLACQMAPAKFDTTSVDILVGEGVFRASGQVQTFAG
FLAVYEEDVDDAEDEDNAKLPLLTEGEDLPVDKLYGDQHFTQPPPRFSEASLVKALEEFG
IGRPSTYASIISTLKDREYVILDKKRFLPTDTGDIVNKFLTEHFAQYVDYNFTAKLENQL
DEIANGGRQWVPVMDSFWKGFKKQIDEKESISRAEVTTESLDEACPKCGKPLSIKFGKRG
RFIACTGYPDCDYTRNMGETAEQAAEEAEAPTVIEGRSCPDCGGELHIKKGRYGKFIGCA
NYPKCKHIEPLEKPRETGVTCPECKTGQLIERKSRYGKLFYSCNTYPKCKYATWNPPIAE
PCPKCNWPILTIKTTKRRGTEKVCPQKECGYAEQIAPPEGKEAAPAEEA
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccagcctcctgatcgttgaatcgccgtccaaggcgaaaacgctgaaaaaatac
ctgggcccggacttcgaggtcctggcctcctacggccacgtgcgcgacctggtgccgaaa
aacggcgccgtcgatccggaaaaagacttcgcgatgaagtaccaactgatcgcgcgcaac
agcaagcacgtggacgccatcgtcagcgcggtgcgcgaggccgaccacgtctacctggcg
actgacccggaccgcgaaggcgaggccatttcctggcacctggtgcaaatcctcaacagc
aagaagctgctgaaggacaagaccgcccagcgcgtggtgttccacgaaatcaccaagaac
gcggtgctggacgccatccagaacccgcgcgacatcgctcaggacctggtggacgcgcag
caggcgcgccgcgcgctggactatctggtgggcttcaacctgtcgccgctgttgtggaag
aagattcgccgcggcctgtccgccggccgcgtgcaaagcccggcgctgcgtctgatctgc
gagcgcgagaacgagatcaaggccttcgtgcagcaggaatactggtcggtacacctggac
agccacaagagccgcaccaagttcagcgccaagctgacgcagctggccggcaagaagctc
gatcagttcgacatccccaacgaggccgagcaagcttcggtgctggcgcgcctgcaaggc
ctgccggccaccgtgggcagcatcgaaaagaaaaagaaatcgcgcagccccgccgcgccg
ttcaccacctccaccttgcagcaggaagccgtgcgcaagctgggcatgaccaccgaccgc
gcgatgcgcaccgcgcagcagctgtacgagggcatggacatcggccagggcaccgtcggc
ctgatcacctatatgcgtaccgactcggtggcgctggccaatgaggcggtggaggaaatc
cgcggctacatcggcctgaaatgggatgccgacttcctgccgaaaaacccggcggtgtac
aagagcaaggccaagaacgcccaggaagcgcacgaagccatccgcccgacctccatcctg
cgcacgccggaaatggtcaagcccttcctgaccaccgaccagttcaagctgtacgacatg
atctggaagcggacgctggcctgccagatggcgccggccaagttcgacaccaccagcgtg
gacatcctggtgggcgaaggcgtgttccgcgccagcggccaggtgcagactttcgccggc
ttcctcgccgtgtacgaagaggacgtggatgacgccgaggacgaagacaacgccaagctg
ccgctgctgaccgaaggcgaagacctgccggtggacaagctgtacggcgaccagcacttc
acccagccgccgccgcgcttctccgaagcgtccctggtgaaggcgctggaagagttcggc
atcggccggccctccacctacgccagcatcatctcgacgctgaaggaccgcgaatacgtg
atcctggacaagaagcgcttcctgcccacggacaccggcgacatcgtcaacaaattcctg
accgagcacttcgcgcagtacgtcgactacaacttcaccgccaagctggaaaaccagctg
gacgagatcgccaacggcggccgccagtgggtgccggtgatggacagcttctggaagggc
ttcaagaagcagatcgacgaaaaagaaagcatttcccgcgccgaagtcaccaccgaaagc
ctggacgaggcctgcccgaaatgcggcaagccgctgtcgatcaagttcggcaagcgcgga
cgcttcatcgcctgcaccggctacccggattgcgattacacgcgcaatatgggcgagaca
gcggagcaggcggcggaagaagccgaagcgccgaccgtgatcgagggccgctcctgcccg
gactgcggcggcgagctgcacatcaagaagggccgctacggcaagttcatcggctgcgcc
aactaccccaagtgcaagcacatcgaacccttggaaaagccgcgcgaaaccggcgtcacc
tgcccggaatgcaagaccggccagctgatcgagcgcaagagccgctacggcaagctgttc
tacagctgcaacacttatcccaagtgcaagtacgcgacctggaacccgccgatcgccgaa
ccgtgcccgaagtgcaactggccgatcctgacgatcaagaccaccaagcgccgcggcacc
gagaaggtgtgcccgcagaaggaatgcggctacgccgagcagatcgcgccgccggaaggc
aaggaagccgcccccgccgaagaggcgtga
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