Chromobacterium phragmitis IIBBL 112-1: DK842_11185
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Entry
DK842_11185 CDS
T05549
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DK842_11185 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_11185 (recB)
Enzymes [BR:
chri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DK842_11185 (recB)
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DK842_11185 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_11
ResIII
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AXE30411
LinkDB
All DBs
Position
2337213..2340800
Genome browser
AA seq
1195 aa
AA seq
DB search
MSAMQALDALNCPLAGVNLIEASAGTGKTWTIAALFVRLLLEERDGAPPPLIDQVLVVTY
TKAATAELRERLRKRLAEMLALLDGKADGDDFLRTLAARFPEGPARDVARQRLTAAVNGF
DAAAIYTIHGFCQRVLTDAAFESGQTFQAELVDDDAARLAEIVDDFWRRRIVAAPLLAQV
LVERGETPDAWLAEIRPYLSKPHLKLRAPDAAGLETARRAASERWQRLAAAPERVEEGLA
RFLDHPGFKANIYRPDTMARAADALRGWLAQPDDLPELDSDSRKLMEKLLPEALAKGMKK
GCEPPAHPLFELVEAWLDAWGAYLEQVAKSLAGLKLELIAWANEELARRRGVERSRSFDD
LLTDLGAALAHPETGPLLAAQVADSFAVALIDEFQDTDPTQYRIFRRCFVEEARPVFLVG
DPKQAIYSFRGADIFAYLAARHDAERQYTLATNRRSDAPLVATVNALFGRELPFLLDGIA
YQPVAASPSSGGLLEVDDDRAPFNAQWIQAGEKELSKEAAERAAAEACANEIARLLTLAG
EGRAAIVRGEARRPLAGGDIAVLVATHSQGDRVRGELRARGVASVALTQESVFASREAGE
LLAVLHAWAEPANEGRLRRALATELAGLNAAEIKAELEDETRWEAQLLKNADDHQRWRER
GFMAAWRHWFARERAAERLLPLPDGERRLTNLGHLAELIQQESESRQGMAPLLAWFAARV
ADPPRGEEAALRLESDAALVKIVTVHTAKGLQYPVVFCPFLWNGALERRGASFWSYHDGD
EPWLAPEAAADDAVKQAARSELLAEKLRLLYVALTRAQYRQYIAWGWVRELKTAALSWLL
HAPGARDLAALEALELDGGMVEAQLRDFLAGRGEAASWLAEPEPCALAGSHEGGRVYAAR
PFERKLYTPWRIASFTSLTHDAGSHLAEAPDYDRAARQEAAEPAAEPARDRFRFPRGAKA
GVCLHEIFENIGFGADEVEIRAAVARALARHGFGEEWLDAGCDLILSTLNAEIAPGARLR
EVADGKRLIELEFTLPVKQLDVKALIGALQKPEHGLAEPFRQAAAALDFASVQGFLKGFI
DLVCEAGGRYYLIDYKSNHLGDDYGRYREDSLVQAVAREHYYLQYLIYLVALRRYFAARG
ADWDGRFGGVRYLFLRGMGEPGCGVWADQPSNSLLDALDALLDGARTREPRSSTQ
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgatgcaggcgctggacgcgctgaactgcccgctggcgggcgtcaacctgatc
gaggcctcggccggcaccggcaagacctggaccatcgccgcgctgtttgtccggctgttg
ctggaagagcgcgatggcgcgccgccgccgctgatcgaccaggtgctggtggtgacctac
accaaggccgccaccgccgagctgcgcgagcggctgcgcaagcggctggctgaaatgctg
gcgctgctggacggcaaggccgatggcgacgattttctgcggacgctggccgcgcgcttt
ccggagggcccggcgcgagacgtggcccgccagcggctgactgccgcggtcaacggcttc
gacgccgccgccatctacaccatccacggcttctgccagcgggtgctgaccgacgcggcg
ttcgagagcggccagacctttcaggccgagttggtggacgacgacgcggcccggctggct
gagatcgtcgacgatttctggcgccgccgcatcgtcgccgcgcccttgctggcccaggtg
ctggtggagcgcggggaaacgccggacgcctggctggccgagatccgcccgtatctgtcc
aaacctcatctgaagctgcgcgcgccggatgcggcggggctggagacggcgagacgggcg
gcgagcgagcgatggcagaggctggcagccgcgccggagcgggtggaggaggggctggcg
cggttcctcgaccaccccggtttcaaggccaatatctaccggccggacaccatggcgcgc
gccgccgacgcgctgcgcggctggctggcgcagccggacgacttgccggagctggacagc
gacagccgcaaactgatggaaaaactgctgccggaagccttggccaaaggcatgaagaaa
ggctgcgagccgccggctcatcccttgttcgaactggtggaggcctggctcgacgcctgg
ggcgcgtatctggagcaggtggccaagtctttggccgggctgaagctggagctgatcgct
tgggccaacgaagagctggcgcggcggcgcggcgtggagcgcagccgcagcttcgacgac
ctgctgaccgacctgggcgcggcgctggcgcacccggaaaccggcccattgctggcggcg
caggtggcggacagcttcgccgtggccttgatcgatgaattccaggacaccgaccccacc
cagtaccggatcttccgccgctgcttcgtcgaggaagcgcggccggtgttcctggtgggc
gatcccaagcaggcgatctacagcttccgcggcgcggacatcttcgcctacctggcggcg
cgccacgacgccgagcgtcagtacacgctggccaccaaccgccgctccgacgcgccgctg
gtggccaccgtcaacgcgctgttcggccgcgagctgccgttcctgctcgacggcatcgct
taccagccggtggcggccagtccctcgtccggaggcctgctggaggtagatgacgaccgc
gcgccgttcaacgcgcaatggatacaggctggcgaaaaagaattgagcaaggaggcggcc
gagcgcgcggcggccgaagcctgcgccaacgagatcgcccgcttgctgacgctggcgggc
gagggccgcgccgccatcgtccggggcgaggcgcggcggccgctggccggcggcgacatc
gcggtgctggtggccacccacagccagggcgaccgggtgcgcggcgaattgcgcgcgcgc
ggcgtggccagcgtggcgctgactcaggagagcgtgttcgccagccgcgaggccggcgag
ttgctggccgtactgcacgcctgggccgagccggccaacgagggccggctgcgccgcgcg
ctggccaccgagctggcgggcttgaacgccgcggagatcaaggccgagctggaggatgag
acgcgctgggaagcccagctgctgaagaacgccgacgaccaccagcgctggcgcgagcgc
ggcttcatggccgcctggcggcactggttcgcccgcgagcgcgcggcggagcgcttgctg
ccgctgccggacggcgagcggcggctgaccaatctgggccacctggccgaactgatccag
caagagagcgaaagccggcagggcatggcgccgctgctggcctggttcgccgcccgcgtc
gccgatccgccgcgcggcgaggaggcggcgctcaggctggagagcgacgcggcgctggtg
aagatcgtcaccgtccacaccgccaagggcctgcagtacccggtggtgttctgcccgttc
ttgtggaacggcgcgctggagcggcgcggcgctagcttctggagctatcacgacggcgac
gagccctggctcgcgccggaggcggccgccgacgacgcggtgaagcaggcggcgcgcagc
gagctgctggcggagaagctgcgcctgctgtacgtggcgctgacccgcgcccagtaccgg
cagtacatcgcctggggctgggtgagggaactgaagaccgccgcgctgtcctggctgctg
cacgcgccgggcgcgcgcgatctggcggcgctggaggcgctggagctggacggcggcatg
gtggaggcgcagctgcgcgacttcctggccggccgcggcgaggcggcgagctggctggcg
gagccggagccgtgcgcgctggcgggcagtcatgaaggcggccgcgtctacgccgcgcgg
ccgttcgagcgcaagctgtacacgccttggcgcatcgccagcttcacctcgctgacccat
gacgccggcagccatctggccgaagcgccggattacgaccgcgcggcgcggcaggaggct
gcagagccggcggcggaaccggcgcgggaccgcttccgtttcccgcgcggggccaaggcc
ggcgtctgcctgcatgaaatcttcgagaacataggcttcggcgcggacgaggtcgagatc
cgcgcggcggtggcccgcgcgctggcgcggcatggttttggggaggaatggctggacgcc
ggctgcgacctgatattgtccacgctgaacgccgaaatcgcgcccggcgcgcggctgcgc
gaggtggcggacggcaagcggctgatcgagctggagttcacgctgccggtgaagcaactg
gacgtcaaagcgctgatcggcgcgctgcaaaagccggagcacggcctggccgaaccgttc
cgccaggccgcggcggctttggatttcgccagcgtgcagggctttctgaagggcttcatc
gacctggtgtgcgaggcgggcggccgctactacctgatcgactacaagtccaaccacctg
ggcgacgactacggccgctaccgcgaggatagcctggtccaggcggtggcgcgcgagcat
tattacctgcaatacctgatttacctggtggcgctgcgccgctacttcgccgcgcgcggc
gcggattgggacggccgcttcggcggcgtgcgctacctgtttctgcgcggcatgggcgag
cccggctgcggcgtgtgggcggaccaaccgtccaactcgttgctggacgcgctggacgcg
ctgctggatggcgcccgaacaagagaaccccgtagttctacgcagtga
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