Chromobacterium phragmitis IIBBL 112-1: DK842_11265
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Entry
DK842_11265 CDS
T05549
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DK842_11265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_11265
Enzymes [BR:
chri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DK842_11265
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DK842_11265
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DK842_11265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1631
Motif
Other DBs
NCBI-ProteinID:
AXE30426
UniProt:
A0A344UKK1
LinkDB
All DBs
Position
complement(2357815..2358627)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGVEPHLEGRTLRGAVVRNPSLRWPVPPDLAERVAGEKVLAVRRRAKYL
LLECESGTLLIHLGMSGSLRVMPAGAPPQKHDHLDLLLDGQLLRYRDPRRFGAVLWHIGP
IELHPLLQALGPEPLSDAFGGETLFQAIRRRGSAVKLAIMDNHVVVGVGNIYANEALFHA
GIAPTRAANALTRGDCDRLASEIKAVLKRAIEAGGSTLRDFVDSEGKPGYFQQSYMVYNR
QEEPCRRCGSPIRHIRQGQRSTYYCPLCQP
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcccgaagtcgaaaccacccgccgcggcgtcgagccgcacctggaagga
cgtaccctgcgcggcgccgtcgtccgcaaccccagcctgcgctggccggttccgcccgac
ctggcggaacgcgtcgccggcgagaaggtgctcgccgtgcgccgccgcgccaaatacctg
ctgctggaatgcgagagcggcaccctgctgatccacctgggcatgtccggcagcctgagg
gtgatgcccgccggcgcgccgccccagaaacacgaccacctggatctgctgctggacggc
cagctgctgcgctaccgcgacccgcgccgcttcggcgcggtgctgtggcacatcggtccg
atcgagctgcatccgctgctgcaggcgctggggccggaacccctgtccgacgccttcggc
ggcgaaacgctgttccaggccatccgccgccgcggcagcgcggtcaagctcgccatcatg
gacaaccacgtggtggtcggcgtcggcaacatctatgccaacgaggcgctgttccacgcc
ggcatcgcccccacccgcgccgccaacgcgctgacgcgcggcgactgcgaccgcctggcg
tcggaaatcaaggccgtgctcaagcgcgcgatcgaggccggcggcagcacgctgcgcgac
ttcgtcgacagcgagggcaagcccggctacttccagcaaagctatatggtgtacaaccgc
caagaagaaccctgccgccgttgcggctcgccgatacgccacattcgccagggacagcgc
agcacttactattgcccgctatgccagccgtga
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