Chromobacterium phragmitis IIBBL 112-1: DK842_12755
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Entry
DK842_12755 CDS
T05549
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chri03016
]
DK842_12755
Enzymes [BR:
chri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DK842_12755
Transfer RNA biogenesis [BR:
chri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DK842_12755
Prokaryotic type
tRNA splicing ligases
DK842_12755
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXE32686
LinkDB
All DBs
Position
2663948..2665168
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AA seq
406 aa
AA seq
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MNDYQTLQAADGAPIKMWTQGVPVEPAARDQLLRTARMPFIYKHLAVMPDVHLGKGSTIG
SVIPTQGAIIPAAVGVDIGCGMMAARTTLTAADLPESLFGLRSAIEAAVPHGRSNTRSGR
DKGAWGAPPATVDAAWAKLLPGFQAIVAKHPKLEKTNNHSHLGTLGTGNHFVEVCLDEAD
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIADLPHRELAYFQEGSQHFDDYVEAVGW
AQDFARQNRMLMMQHVVDAARKEIAKPFAADVEAVNCHHNYVQKETHFGHEVLVTRKGAV
AAHTGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRAEAKRRFSVDDQIRATA
HVECRKDADVIDEIPMAYKDIDAVMAAQDSLVEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacgactatcaaaccctgcaggcggccgacggcgcgccgatcaagatgtggacccag
ggcgtgccggtggagccggccgcgcgcgaccagttgctgcgcaccgcgcggatgcccttc
atctacaaacacctggcggtgatgcctgacgtgcatctgggcaagggatcgaccataggc
agcgtgatccccacccagggcgcgatcatcccggcggcggtgggcgtggacatcggctgc
ggcatgatggcggcgcgcaccacgctgacggcggcggacctgccggagagtttgttcggc
ctgcgcagcgcgatagaggccgctgtgcctcacggccgcagcaatacccgcagcgggcgc
gacaagggcgcctggggcgcgccgccggcaaccgtggacgcggcctgggccaagctgctg
ccgggcttccaggccatcgtcgccaagcatcccaagctggagaagaccaacaaccatagc
catctggggacgctgggcaccggcaaccacttcgtcgaagtgtgtctggacgaggccgat
cgcgtctggttcatgctgcactcgggttcgcgcggcgtgggcaacgccatcggcaacctg
ttcatcgaactggcccaggccgacatgcgccagcacatcgccgacttgccgcaccgcgag
ctggcttatttccaggagggcagccagcacttcgacgattacgtggaggcggtgggctgg
gcgcaggacttcgcgcgccagaaccgcatgttgatgatgcagcacgtggtggacgcggcg
cgcaaggagatcgccaagcctttcgccgcagacgtggaggcggtgaactgccaccacaac
tatgtgcagaaggaaacccacttcggccatgaggtgctggtgacgcgcaagggagcggtg
gccgcccacacggggcaactgggcatcattccggggtcgatgggcgccaagagcttcatc
gtgcgcggcctgggcaacgaagaggcgttctgctcctgcagccacggcgcggggcgaacc
atgagccgcgccgaggccaagcgccgtttcagcgtggacgaccagatccgcgccaccgcc
cacgtagagtgccgcaaggacgccgacgtgatcgacgagattccgatggcctacaaggac
atcgacgcggtgatggcggcgcaggactcgctggtggaagtggtgcacacgctgcggcag
gtggtgtgcgtgaagggatag
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