Chromobacterium phragmitis IIBBL 112-1: DK842_16790
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Entry
DK842_16790 CDS
T05549
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chri03009
]
DK842_16790
Enzymes [BR:
chri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DK842_16790
Ribosome biogenesis [BR:
chri03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DK842_16790
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
UPF0020
MTS
Methyltransf_11
Methyltransf_23
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
AXE31407
LinkDB
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Position
complement(3547525..3549069)
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AA seq
514 aa
AA seq
DB search
MTHQQTIALVESLDHEGRGVAHVDGKTIFIDGALPYEKVVYSSYRKKPSYENANTSQVLK
ESFMRADPRCPHFGVCGGCSMQHVEFTAQVAIKQRVLEDNLKRIGKVKAERVLTPIAGPA
WHYRHRARLSARMVAKKGGVLVGFHEKSSSYIAEMRECHILPKHISDLIMPLRAMIATLS
ISQRMPQVEVAVGDKIDILVFRNMDAITDADFAVLKAFSDQHGSTERPLQIWLQPKGPDT
CYPIYPLDAPKLTYSMPEYAVEMPYYPTEFTQVNPQINAVMVARALKFLDPQPGERIADM
FCGIGNFTLPIARSGAVVHGMEGSQPLVRRAVENATHNQLQDRVTYEMANLFEVTEESFA
ALGQFDKMLVDPPRDGAVQLLKAITEDTAPKRIVYVSCNPATLARDAGILVNTKGYTLKA
AGIINMFPHTAHVESVAWFEKTSPCKSRKEVEEIEAIEAAEREAAKAARLAEENAEKAKK
AAELAEKAAAKEARRAHYFAEKARRDAEETAADQ
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaccaacagactatcgccctggtcgagtcgctggaccacgaaggccggggggtc
gcccacgttgacggcaagaccatcttcatcgatggcgccctgccgtacgagaaagttgtc
tacagcagctaccgcaagaaacccagctacgaaaacgccaacaccagccaagtgctgaag
gaaagcttcatgcgcgccgatccccgctgcccgcacttcggcgtctgcggcggctgttcg
atgcagcatgtggagttcaccgcccaggtggcgatcaagcagcgcgtgctggaagacaac
ctcaagcgcatcggcaaggtcaaggcggaacgcgtgctcacccccatcgcgggtccggcc
tggcactatcgccaccgcgcccgcctgtccgcccgcatggtggccaagaagggcggcgtg
ctggtgggcttccatgaaaaaagctccagctacatcgccgagatgcgcgagtgccacatc
ctgcccaagcacatctccgacctgatcatgccgctgcgcgcgatgatcgccacgctgtcc
atcagccagcgcatgccgcaggtggaagtggcggtcggcgacaagatcgacatcctggta
ttccgcaacatggacgccatcaccgatgccgacttcgccgtcctgaaggccttctccgac
cagcacggctcgacggagcgcccgctgcagatctggctgcagcccaagggcccggacacc
tgctatccgatctacccgctggacgcgcccaagctgacctacagcatgcccgagtacgcg
gtggaaatgccctactaccccaccgaattcacccaggtgaacccgcagatcaacgcggtg
atggtggcccgcgcgctgaagttcctggacccgcagccgggcgagcgcatcgccgacatg
ttctgcggcatcggcaacttcaccctgcccatcgcccgctccggcgccgtggtgcatggc
atggaaggcagccagccgctggtgaggcgcgcggtggagaacgccacccacaaccagctg
caggaccgcgtgacgtacgagatggccaacctgttcgaagtgaccgaggaatcgttcgcg
gccctcggccagttcgacaagatgctggtggacccgccgcgcgacggcgcggtgcagctg
ctgaaagccatcaccgaagacaccgcgcccaagcgcatcgtctacgtgtcctgtaacccg
gccacgctggcgcgcgacgccggcatcctggtcaacaccaagggttacacgctgaaggcg
gccggcatcatcaatatgttcccgcacaccgcgcacgtcgagtccgtggcctggttcgaa
aagaccagcccatgcaagtcgcgcaaggaagtcgaggagatcgaggcgatcgaagccgcc
gaacgcgaggccgccaaggcggcgcgcctggcggaggaaaacgcggaaaaagcgaagaaa
gccgccgagctggcggagaaagccgcggccaaggaagcccgccgcgcgcattatttcgcc
gagaaggcgcgccgcgacgccgaggaaaccgctgcggatcaatag
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