Chromobacterium phragmitis IIBBL 112-1: DK842_19565
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Entry
DK842_19565 CDS
T05549
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03410
Base excision repair
chri03430
Mismatch repair
chri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DK842_19565 (recJ)
03430 Mismatch repair
DK842_19565 (recJ)
03440 Homologous recombination
DK842_19565 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_19565 (recJ)
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DK842_19565 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DK842_19565 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DK842_19565 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Glyco_trans_4_4
Motif
Other DBs
NCBI-ProteinID:
AXE31900
UniProt:
A0ABV0IPA6
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All DBs
Position
complement(4121061..4122749)
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AA seq
562 aa
AA seq
DB search
MSQIVTREVPAELQHKLLGQGLTPLQARLYAARGILDSQELDYGLKGLLPYQNLKNAEAM
ASKLADAIAADKRLLVVADYDADGATACAVAVKGLSMLGARISFIVPNRFEYGYGLTPEI
VELAAQKRPDIIVTVDNGIASVAGVEAAKALGIEVLVTDHHLPGDALPDALIVNPNQPGC
EFPSKNLAGVGVMFYVLMALRAEMRRRGAFDEQTQPNLGVLLDLVALGTVADVVRLDRNN
RTLVENGLKRMRAGKMAPGIAALFRVAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGI
ACLLASNEEQAMRLAQELDKLNRERRGIEAGMQDEALAALSGIDADNRYTLSLYRDDWHQ
GVVGIVASRLKERFHRPSIVFAPGDEGEIKGSGRSIPGFHLRDALDLVYKRHPGLILKFG
GHAMAAGLSLDERRFGEFQQAFEAVARELLDEKQLTRTIETDGSLPARDVNLQLAETLAA
EVWGQGFPVPYFHDPFIVVNQKLVGDKHLKLRLARDGCEFDAMLFNHADWLPDRIQAVYQ
LIANEWQGRKELQVYLQHWTAC
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaatcgtcactcgagaagtgcccgccgaactgcagcacaagctgcttggccaa
gggctgactccgctgcaggcgcggctgtacgccgcccgcggcatcttggacagccaggag
ctggattacggcctgaaagggctgctcccttatcaaaatctgaagaacgccgaggcgatg
gccagcaaattggccgacgccatcgccgccgacaagcgcttgctggtggtggccgactac
gacgctgacggcgccactgcttgcgcggtggcggtcaaagggctctccatgctgggcgcg
cgcatcagcttcatcgtgcccaaccgcttcgaatacggctacggcctgacgccggaaatc
gtcgagctcgcggcgcaaaagcggcctgacatcatcgtcaccgtcgacaacggcatcgcc
agcgtggcgggcgtggaagcagccaaggcgcttggcatcgaggtgctggtgaccgatcac
cacttgcctggcgacgcgctgcctgacgcgctgatcgtcaaccccaaccagccgggctgc
gagtttccgtccaagaacctggctggcgtcggcgtgatgttctacgtgctgatggcgttg
cgggcggaaatgcgccggcgcggcgcgttcgacgaacaaacccaacccaatctgggcgtg
ctgctcgacttggtggcgctgggcacggtggccgacgtggtgcggttggaccgcaacaac
cgcaccttggtggaaaacggcctcaagcgcatgcgcgccggcaagatggcgccgggcatc
gccgccttgttccgcgtggcgggccgcgcccactacaaggccaataccttcgatctaggc
tttaccctgggcccgcggctgaatgccgccggccggctggacgacatgagcctgggcatc
gcctgcctattggcgagcaatgaagagcaggcgatgcggctggcgcaggaattggacaag
ctcaaccgcgagcggcgaggcatcgaggccggcatgcaggacgaagcgctggcggcgctg
tccggcatagacgccgacaaccgctacacgctcagcctgtaccgtgacgactggcaccag
ggggtggtggggatcgtggcctcccggctgaaggaacgcttccaccggccgtccatcgtg
ttcgcgcccggcgacgagggcgaaatcaagggctccggccgctccatccccggcttccat
ctgcgcgacgcgctggatttggtctacaagcgccatccgggactgatcctcaagttcggc
ggccatgcgatggcggccgggctgagcctggacgagcgtcgtttcggcgagtttcagcaa
gccttcgaggcggtggcgcgcgagctgctggacgaaaaacagctgacccgcaccatagag
accgacggcagcctcccggcgcgggacgtcaatctgcagttggccgagacgctggcggcc
gaggtatgggggcagggcttcccggtgccgtacttccacgatcccttcatcgtggtgaac
cagaagctggtgggcgacaaacacttgaagctgaggctggcgcgcgacggctgcgagttc
gacgccatgctgttcaaccacgccgactggctgccggaccgcatccaggcggtgtatcag
ctgatcgccaatgaatggcagggccgcaaggagctgcaggtgtatttgcagcattggacc
gcttgctga
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