Chryseobacterium sp. JV274: CHRYMOREF3P_1930
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Entry
CHRYMOREF3P_1930 CDS
T08877
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj02020
Two-component system
chrj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CHRYMOREF3P_1930
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CHRYMOREF3P_1930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrj03021
]
CHRYMOREF3P_1930
Transcription machinery [BR:
chrj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CHRYMOREF3P_1930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
Motif
Other DBs
NCBI-ProteinID:
CAD0220937
LinkDB
All DBs
Position
I:complement(1996228..1997691)
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AA seq
487 aa
AA seq
DB search
MLKQHLQLKLGQKLAPQQIQLMKLIQLHTLEFEEELERELEENPALEIAKEDSKEDEYSS
LEDAYKDEGTESIETDFDVNEYIYDDEPSYKTASSNYSPDDEEFDNESLLTEGQSLYDYL
TEQIHLINISDEDLKIAEYLIGNLDTDGYLRREIKSIVDDLAFSQGIYTTKEKVEDILEN
YVQKLDPSGVGARGLQECLLLQIEKKVSSDKAVSLAANILRHQFEALTNKHYNKIIQKYD
IEEEDLKDALEEISKLSPKVGGNFDTQTITINQEIIPDFVIQVKDGLVIPMLNSKNAPTL
RVSEEYKDILTTYSHDKNSSEHKQAALFIKQKLDAAKWYIDAINQRQNTLLQTITAIVKF
QKDYFITGDEKSLKPMILKDVADITGFDISTISRVVKSKYADTPNGIVYLKDLFSDSLTN
DDGEEVSTKEIKTHLQEVISKENKRKPLTDDALVVILKEQGYNIARRTIAKYREQLNIPV
ARLRKEL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacaacacttacaactcaaattaggacaaaagctggcccctcagcaaatccag
ttgatgaagcttattcaacttcatactcttgaatttgaagaggagttggagagagagtta
gaagaaaacccggctttggaaattgcgaaagaagattctaaggaagatgaatactcttcc
ctggaagatgcttataaggatgagggtacagaaagcattgaaacagatttcgacgtcaat
gaatatatctatgacgatgaaccgagctataaaactgcatccagcaactattctccggat
gatgaagaatttgacaacgaaagccttctcacagagggacagtccttatatgactatctt
acagaacagattcacctgattaatatcagtgatgaagatcttaagattgcagaatacctt
atcgggaacttagatacagacggatatcttagaagagaaatcaagtctattgttgatgat
ctggctttctcacaaggaatttacacaactaaagaaaaagttgaggatattctggagaac
tatgttcagaaactggatccatctggagtaggagcaagaggcctgcaggaatgtttattg
ctgcaaattgaaaagaaagtaagctcagataaagcagtttctttagctgccaatattttg
agacatcagtttgaagccctgacgaataagcactacaataagatcattcagaaatatgat
attgaagaagaagatctgaaagatgcactggaagaaatctcaaaattatccccgaaagta
ggagggaacttcgatacacaaacaattacaattaatcaggaaattattccggattttgtg
attcaggtaaaagatggattggtgattcctatgctcaacagcaaaaatgcacctacttta
agagtttctgaagaatataaagatattctgactacttattcccatgataaaaactcatcg
gaacataagcaggctgcattatttatcaagcagaaactggatgccgcaaaatggtatata
gatgctattaatcagcgtcagaatactttattacagacgattacagccattgtaaagttt
cagaaggattatttcattaccggagacgaaaagtctctgaaaccaatgattctgaaggac
gttgctgatattacaggatttgatatctccactatttcaagggtggtaaaaagtaagtat
gcagatacccctaacgggattgtatatcttaaagacctgttttcagacagcttaacgaat
gatgatggagaggaagtttctaccaaagagatcaaaacccatcttcaggaagtaatcagt
aaagaaaacaaaagaaagccgcttaccgatgatgcattagtggtaattctaaaggaacag
ggttataatattgccagaagaacgattgcgaaatatcgtgaacagctcaatattcctgtc
gcaagattaagaaaagaactttaa
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