Chryseobacterium sp. JV274: CHRYMOREF3P_2298
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Entry
CHRYMOREF3P_2298 CDS
T08877
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHRYMOREF3P_2298 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrj03021
]
CHRYMOREF3P_2298 (rpoC)
03400 DNA repair and recombination proteins [BR:
chrj03400
]
CHRYMOREF3P_2298 (rpoC)
Enzymes [BR:
chrj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHRYMOREF3P_2298 (rpoC)
Transcription machinery [BR:
chrj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHRYMOREF3P_2298 (rpoC)
DNA repair and recombination proteins [BR:
chrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHRYMOREF3P_2298 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CAD0221456
UniProt:
A0A7U7CXN3
LinkDB
All DBs
Position
I:complement(2371524..2375789)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIARMGAEAVEDLLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPVKEDGVIVTRLIETSVGRILFNQIVPKQ
SGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIASSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPETDELIASADQVIIEALAKRIEEAGLESVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNELRTPLMVANVPYGSILAVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGIEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVEAGDSKEFMPGQMITARELRDE
NSKLKREDLSLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDELNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaagactcaagaggggaggttttaaaaccggaaactattaactacaga
actcacaaacctgaaagagacggattattctgtgagaaaatctttggtcctgtaaaagat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggtgttgaagttactgagaaaaaagtaagaagagaaagaatcggtcatatcggtttg
gttgttcctattgctcatatctggtacttccgttcattgccaaacaaaatcggatacctt
ttaggaatcccttctaagaaattagatatgatcatctactacgaaagatatgtagtgatt
cagcagggtattgctaaaaaattagatggttctgattttgaaaatatggaattccttaca
gaagaagaataccttgatatcatggaaactcttcctgtagaaaaccagtatcttgatgat
tctgatccaaacaaattcatcgccagaatgggtgctgaagctgtggaagatctattaaaa
agaatcgatcttgatgcattgtctttcgacttgagacataaagctcacaacgaaggttca
aaacaaagaagaacagaagctcttaaaagattgaacgttgtagaagcattgagaggtgct
aatacaagaatgatcaacagaccagagtggatgatcatgcgtgtacttcctgttatccca
ccagaattaagaccattagttccattggatgggggacgtttcgcaacttctgacttgaat
gacctttatagaagagtaattatcagaaataaccgtttgaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataacacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttactagggaaaagg
gtagactactcagcgcgttcggtaattgttgtaggtccaaacttgcagcttcacgaatgt
ggtattcctaaagatatggcagctgaactttacaaaccgtttatcattagaaaactaatt
gaaagaggaattgtaaaaactgtaaaatctgcaaagagaattattgatagaaaagaaccc
gtagtttatgatatccttgaaaacgtgatgaaaggtcaccctgttctattgaacagagca
cctacgcttcacagactgggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccagctacacccgttggtaacaacagcattcaacgccgatttcgatggtgaccagatg
gcggtacacttaccgttaggaccagaggcaatccttgaagctcagctattgatgctaggt
tctcaaaacattttgaaccctgcaaacggttctccaattacagtaccttctcaggacatg
gttcttggtctttatttcatgactaaagaattgagctctacagaagatatgaaagtaaaa
ggtgaaggtcttgcattctattctcctgaggaagcagaaattgcttatgctgaaggtaga
gtttctttaaatgctaaggtaagatgtagactacctgttaaagaagatggagtaatagta
acaagattgatcgaaacttctgttggtagaattttattcaaccagattgtacctaagcag
tcaggatatatcaatgaacttcttactaagaaatcattgagaaacgttatcggtaagatc
cttgctgatacagatttccctacaactgtgaagttccttgatgcaatgaaagacttaggg
tattcaaatgcatttaaaggaggtctttcattctcacttggggatattgtagttcctgtt
gagaaaaagcagatgattgcttcttcaattgaaactgtagacgaaattagagctaactat
aacatgggtctaattaccgatacagaacgttataaccaggtaatcgacgtttggacaaat
accaacgccggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtatatatgatgcttgactctggagcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggctaaaccgcaaaaagccggttctacgggagcggag
atcatcgaaaacccgatccttgccaactttaaggaaggtctttcgattctagagtacttt
atctctacccacggtgctcgtaagggtcttgcggatactgctcttaagacagccgatgct
ggttacttaacgagaagattggtagacgttgcacaggacgttatcgttacagaagacgac
tgtggaactctaagaggtacagaagttaccgcacttaagaaaaatgacgagatcgttgaa
agaatctctgaaagaatcttaggtagagtatcgctacataatatttacgatcctgaaact
gacgagcttattgcaagcgcagatcaggtgatcattgaagcattggcgaaaagaatcgaa
gaagctggattagaatcagttgaggttcgttcaccattaacttgtgaagctaagaaaggt
atctgtgctaaatgttacggtagaaacttagcaacaggtaaagtgatccacatgggtgaa
gcggtaggtgtaattgcagcacagtcaattggggaaccaggtactcagcttacgttgaga
accttccaccaagggggtactgcaggaaacgtatcagaaaacccatctatcgttgcaaga
agagatggtatcgttgaaatggatgaagtaagaactattacttctgaagatgaaaacggt
aatacagctgaggttgtagtttcccgttcaacagaattcagattagttgctgataatgag
cttagaactccattaatggtagctaacgtaccttacggatctatattagctgtaaaacca
ggtgataaagtgaagaaaggggatacaatctgtagatgggatccatataacgcagtaatt
attgctgaaacttcaggtaaggtagaatacgaggatatcatccagggtatttcattccaa
cttgaaattgacgaacaaacaggattcgaagagaaagtaatctctgaatctagaaataag
aaagccgtacctaccttgaaggtggtagactctaaaggtattgagcagaaagcttacaac
ttaccggtaggagcccacttaatggtaaacgatggtgaaaaaattaaggctggtaaagtc
ttaatcaaaatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttacagaattattcgaagctagaaacccttcaaatccagcggttgttactgaaatcgac
ggggtagtttcttacggaaaaattaagagaggtaaccgtgaacttattgttgaagctaaa
actggagaaagaaaaatttacctggtaaaactttccaaccagattcttgttcaggagaat
gacttcgtaagagcaggttctccgctttctgacggttctatcacaccggaagatatctta
agaattaaaggcccaacagcagttcaggaatacttagtaaatgagatccaggaagtttac
cgtctacagggggtaaaaatcgacgacaagcacttcgaaattatcgtaagacagatgatg
acgaaagtatctatcgtagatggaggtgatactcaattccttgaaggagctcttgagcac
aagtatgatttcttggaagaaaacaacagagtattcggtcttaaagtagtagtagaagct
ggtgattctaaagaattcatgccaggtcagatgattactgcaagagaattaagagatgaa
aactctaagttgaaacgtgaagatttaagtcttgtagaagtaagagaagctcttcctgct
acagcaactcctgtattacaaggtattacaagagcggcccttcagactaagtcattcatg
tctgcagcatcgttccaggaaacaactaaagttcttaacgaagcagctgttgctggtaaa
gtagacgaacttaacggtcttaaagaaaatgtaattgtaggtcacagaatccctgcaggt
acaggtcttaaagagtatcagaacgttattgtaggttctaagaaagaattcgaagacctt
aactaa
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