Chryseobacterium sp. JV274: CHRYMOREF3P_2387
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Entry
CHRYMOREF3P_2387 CDS
T08877
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHRYMOREF3P_2387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrj03400
]
CHRYMOREF3P_2387
Enzymes [BR:
chrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHRYMOREF3P_2387
DNA repair and recombination proteins [BR:
chrj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CHRYMOREF3P_2387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
DUF5655
Motif
Other DBs
NCBI-ProteinID:
CAD0221687
UniProt:
A0A7U7HDU3
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All DBs
Position
I:2478952..2480823
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AA seq
623 aa
AA seq
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MLAKLSEEAFNDKGWIFEIKWDGYRAIADLSHDTPLFYSRNGISFLSKFEKIALEFEKQK
HHMILDGEVVAYDEQGEPNFQFLQQIGDHPDAALVYHVFDLLWLNGHSTEDLPLIQRKEL
LKETLTETDRIKYCDHIQEKGIEFFTQMKKMQLEGMIAKRAESPYIENHRTSDWLKIKFS
NTEEVIICGFTEPRGSRKSFGALILGKYLNGKLTYCGHTGTGFNNASLKELYQKLQKLVV
KSSPFEIIPKTNMPVTWTKPELICEIKYSEITRDGIFRHPVFIGIREDKDFKDIKDSPFT
KKSKEMKTKASSKKTEVSEKEKEITLDKHIVKLTNQDKTYFPKDGITKGDVIEYYQSVAT
YILPHLKNRPLSLNRFPNGIEEQGFYQKDAGDHIPDWIKTTQVYSESNDKYIDYMYCNDK
ATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSSKNTFDEVIETALQVNEVLKTIK
VKGYCKTSGSTGIHIYIPMGAHYDFDQVKDFAHILMKQVNDRLPKITTLERSLQKRDNKK
IYLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWNEFKPGLKPIDFNINNALDRIKEKGD
LFKPVLGKGIDMMKALELLQNID
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgttggctaagctttccgaagaagccttcaatgataaaggctggatttttgaaataaaa
tgggacggctatagagccattgccgacttaagccatgacactcctctcttctattcccgg
aatggaatttcctttttatcaaaattcgaaaaaattgcactggaattcgaaaaacagaaa
catcatatgattctggatggtgaagttgtagcgtatgatgaacaaggggaacctaatttc
cagtttttacagcagattggagatcatccggatgctgcgcttgtgtaccatgtttttgat
cttctatggctaaatggtcattctaccgaagaccttccccttattcagcgaaaggaactt
ttaaaagagactctgacagaaactgatcgtattaaatattgtgatcatattcaggaaaag
ggtattgagttttttacacagatgaaaaaaatgcaattggaaggtatgattgcaaagcgg
gcagaaagcccatacattgaaaatcacagaaccagtgactggctgaaaatcaaattttcc
aatacagaagaagttattatttgtggtttcacagaacccagaggttcacgaaaaagtttc
ggggccttaattttaggaaaatatttgaatggaaagcttacttactgtggacatacggga
acaggcttcaataatgcttctttaaaagagctttaccagaaacttcagaagctggttgta
aaatcatctccattcgaaattattccaaagaccaatatgccggtaacatggacaaagcct
gagctgatctgtgaaataaaatattctgaaattacaagggacggaatcttcagacatcct
gtttttatagggataagagaagacaaagattttaaagatatcaaagattcacccttcacc
aaaaaatctaaagaaatgaaaacgaaagcatcatcaaaaaaaactgaagtttctgagaaa
gaaaaagagatcactttggacaaacatatcgtaaaactgaccaatcaggataaaacctat
ttcccaaaagatggcattactaaaggagatgtcattgagtattatcaatctgtagctact
tatattctgcctcatttaaaaaaccgtccgctttctctcaaccgctttccgaatggaatt
gaagagcaggggttttatcagaaagatgccggagatcatatcccggactggataaaaact
acacaggtttattctgaatccaatgataaatacatcgactatatgtattgcaatgacaaa
gcaactctagcctacctgaataatttaggctgtatagacctcaacccatggaatagttct
ttacccgatctggagcatcctgattatctggttttagatcttgatccatcttccaaaaat
acatttgatgaggtaattgaaacagcacttcaggtgaatgaggttttaaaaacgattaaa
gtaaaaggatactgcaaaacttccggaagtacaggaattcatatttatattcccatggga
gctcattatgattttgaccaggtaaaagattttgcccatattcttatgaaacaggtcaat
gacagacttcctaagatcactactttagaacgaagccttcaaaaaagggataacaaaaaa
atctatctcgattatcttcaaaacaggacgggacaaaccctggcaagtgcatacagcctg
agacctaaacaaggtgcttcagtttctatgcctttggattggaatgaattcaaacccgga
ttgaaacctatagattttaatattaataatgctctggacagaatcaaagaaaaaggagat
ttgttcaaaccggttctgggtaagggaattgatatgatgaaggctctggagttgctacaa
aatattgattaa
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