Chryseobacterium sp. JV274: CHRYMOREF3P_3160
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Entry
CHRYMOREF3P_3160 CDS
T08877
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHRYMOREF3P_3160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrj03021
]
CHRYMOREF3P_3160
03019 Messenger RNA biogenesis [BR:
chrj03019
]
CHRYMOREF3P_3160
Transcription machinery [BR:
chrj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CHRYMOREF3P_3160
Messenger RNA biogenesis [BR:
chrj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CHRYMOREF3P_3160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Rho_N
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
CAD0222885
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All DBs
Position
I:3322035..3323876
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AA seq
613 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARTSNENDKIFAILDFQASNPKVAKDYFNATETT
SVTTEEAPADKPVKAPARKAVPKKPAAKPKTNTNTNTKAPAEEPKAEEKVEEKVPASEEV
KPEEPTAEVAAITEESAASAQAKKKRKRVSTNAGNAEVSQEKTEAPKNTESQEPAQAEEK
PNNPQQQANRPQKGHNHPQNSGNQHKNQNQNQQHQQHQNQNQNQNRHSEKAEEQHDHKKE
FNFDGLVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNYGLKTGDTVKGIVR
LPKEGEKYFSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGSGSTISTRIVDLF
APIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERSVNA
EVIASTFDEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVL
SGGVDANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQL
DRKIANRRIYPAIDLISSSTRRDDLLLDEVTSQRMWIFRKYLSEMNPVEAMEFVNKNIKG
TLNNEEFLMSMNK
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaaa
gatttgggcgttaaagttgcaagaaccagcaatgaaaatgacaagatctttgctattctt
gactttcaggcttctaaccctaaagttgcaaaagattatttcaacgccacagaaaccacc
agtgtaactactgaagaggccccagcagataaacctgttaaagccccggcaagaaaagct
gttccgaagaaaccagcagccaagccaaaaacaaatacaaacacaaatacaaaagctccg
gcagaagaacctaaagcagaagaaaaagtagaagaaaaggtacccgcttctgaagaagta
aaaccggaagaacccacagctgaagtagctgcaataacagaggaatctgcagcaagcgcc
caggctaaaaagaaaagaaaaagagtttctaccaatgcaggtaatgcagaagtatctcag
gaaaaaacagaagctccaaaaaacacagaatctcaagagccagctcaggctgaagaaaag
cctaacaatcctcaacaacaggctaacagacctcaaaaaggacacaaccatccacagaat
agtggaaaccaacataaaaatcaaaaccagaaccaacaacaccagcagcatcaaaaccaa
aatcagaatcaaaacagacattctgaaaaggcagaggagcagcacgaccataaaaaagaa
ttcaatttcgatggattggtaagcattgaaggtgttttggaaattttaccggataactac
ggatttttacgttcatcagacttcagctatatctcttctccagatgatgtgtatgtatct
acagcacagatcagaaattatggtttaaaaaccggagataccgttaaaggaattgtaaga
cttccaaaagaaggtgaaaaatatttttcattattaaaacctacagaagttaacggacgt
gaccttgcattcatcaaggaccgtgttgcttttgaatatcttactccgcttttcccggaa
gaaaaattcaatttagcaggaagcggatctaccatttctaccagaattgtagatttattt
gcacctattggaaaaggtcagagagcaatgatcgttgcacagcctaaaacaggtaagacg
atgttgcttaaagatattgctaattctattgcagccaaccacccggaagtatacatgatg
gttcttttgattgatgagcgtccggaagaggttactgatatggaaagaagtgtaaatgca
gaagttattgcctctacatttgacgaagcagctgaaaaacatgtgaaagtagctaacctt
gttcttgcgaaagcacagagaatggttgagtgtggacacgatgtagtaatcttactggat
tctattacaagattggcaagagcatacaacacagttactcctgcatcaggtaaggttctt
tccggtggggtagacgccaatgcacttcacaagccgaaaagattctttggagcagcaaga
aaaatcgaaggaggaggatctctgacgatcattgcaaccgcattgattgatacaggatct
aaaatggatgaagtaatctttgaagaattcaaaggtactggtaacatggagcttcagcta
gacagaaaaattgctaacagaagaatttatcctgctattgacttaatttcttccagtacc
cgtagagatgatcttcttcttgatgaagtgacttctcagagaatgtggatcttcagaaaa
tatctttctgaaatgaatcctgtagaagctatggaatttgtaaataagaacatcaaagga
actctcaacaatgaagaattcctgatgtctatgaataaataa
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