Chryseobacterium sp. JV274: CHRYMOREF3P_3933
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Entry
CHRYMOREF3P_3933 CDS
T08877
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03030
DNA replication
chrj03410
Base excision repair
chrj03420
Nucleotide excision repair
chrj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHRYMOREF3P_3933 (polA)
03410 Base excision repair
CHRYMOREF3P_3933 (polA)
03420 Nucleotide excision repair
CHRYMOREF3P_3933 (polA)
03440 Homologous recombination
CHRYMOREF3P_3933 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrj03032
]
CHRYMOREF3P_3933 (polA)
03400 DNA repair and recombination proteins [BR:
chrj03400
]
CHRYMOREF3P_3933 (polA)
Enzymes [BR:
chrj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHRYMOREF3P_3933 (polA)
DNA replication proteins [BR:
chrj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHRYMOREF3P_3933 (polA)
DNA repair and recombination proteins [BR:
chrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CHRYMOREF3P_3933 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHRYMOREF3P_3933 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
DUF2202
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CAD0224163
LinkDB
All DBs
Position
I:4133530..4136364
Genome browser
AA seq
944 aa
AA seq
DB search
MDATQDKRLFLIDAYAMIFRGYYALIRNPRLTSKGLDTSAIFGFTNSLIELIRREKPTHL
AVVFDVGQASVRTDDYSDYKANRSETPEAIKIAVPYIHRILEAMHIPRLGVEGYEADDVI
GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVDEVKAKYEIEDP
KQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGNIETLLANTDQLKGKLKEKVEASA
ERGILSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFDEIEFRRLYENLYRAFASAPT
ETVVVSEVEVKQTPAGTEMKGQVMQLDLFANFEELEQATSTKSTIEQNDHLYQFIDNPKA
QKKLVDNLLKQKVVCFDTETTSLNELEAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEI
FRPFFEKEDLLKIAHNLKYDYKVLKQYDITVKGAMFDTMIAHYLLNPDGRHGMDYLSEVY
LNYKPVSIETIIGKKGKKQGSFRDADLRTQTDYAAEDADITFQLYELFAPQLKKENLEEL
FYNIEMPLMEVLAKMELAGISLDEKWLAQESIDLENDLKQLETTIFELSGEEFNMNSPKQ
LGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDAL
PSQIDKEDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISA
DYSQIELRLIAEISGEDNMIKAFQDGEDIHASTAAKLFKIPLEEVSKTQRSQAKTVNFGI
IYGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVNKARQMGYVETILGRKRH
LKDINSNNFVVRGHAERNAVNAPVQGSAADVVKLAMIKIDREIMEQQLKTKMLLQVHDEL
IFESPADEIEAASKLIKTEMENALKTQVPLLVEIGVGDNWLEAH
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaacacaagataaaaggctgtttctcatcgatgcctatgcgatgattttcaga
ggatattacgcattaatcaggaatccgagactcaccagcaaaggactggatacttctgct
atctttggttttaccaattctttgatcgaattgatcagaagagaaaaacctacccacctg
gcagtagtttttgatgtaggacaggctagtgtaagaactgatgactattcagattacaaa
gccaacagaagcgaaactcctgaggcgattaaaattgctgttccatacatccacagaatt
cttgaagccatgcatattccacgcctgggagtagaaggatatgaagcggatgatgtaata
ggtaccattgcgtgcaaagcagaaaaagaagggtacaccactttcatggtaacgccggat
aaggattttgcacagctggttacagataaaattaagatttataagccaggtttaaaaggt
ggtgatattgaaattctgggcgttgatgaggtaaaggcaaaatatgagattgaagatcct
aagcaggttatcgattttcttgccatgatgggagatgcggtagataatatccccggactg
gaaggtgtaggagagaaaactgcgatgaagttccttaaagaattcggaaatatagaaact
ttattagctaatactgatcaactgaaaggaaaactgaaagagaaagtagaagcttctgca
gaacgtggcattttatctaaaaaattagcaaccattatctgtgatgctcctgtagaattc
catcaggaacaatacgatctggaaacgccggattttgaaaaagtaaaagaagtttttgat
gaaatagaattcagaagactttacgaaaacctttacagagcttttgcatctgctccaaca
gaaacagtggttgtgagtgaagtggaagtgaagcagactccagctggtacagaaatgaaa
ggacaggtgatgcagcttgatctttttgccaattttgaagagctggaacaggctacttct
acaaaatctactattgagcagaacgatcatctttatcagtttatcgacaatccgaaagcc
cagaaaaaattagttgataatctgttgaagcaaaaggttgtttgctttgatacggaaact
acttcattaaacgaactggaagcagaattggtgggaatgagtttctcttataaaaaaggg
cttgcctattatattccgctttctgaagacagagccgaagtgttacagacgttagagatt
ttcaggccgttttttgaaaaggaagacctgctgaaaattgctcacaatctgaaatacgat
tataaagttttaaaacaatacgacattactgttaaaggggcaatgtttgataccatgatc
gcccattacctgttgaatccggacggaagacatggtatggattatctttcagaagtatac
ctgaactataaaccggtatccatagaaaccatcatcgggaaaaaaggtaagaaacagggc
agcttcagagatgcagatctgagaacgcagacagattatgcagcagaagatgcagacatc
actttccaattgtatgagctttttgcaccacaattgaaaaaagaaaatctggaagagctt
ttctataatattgaaatgcctctgatggaagtcttggcaaaaatggaactggcaggtatt
tctctagatgaaaaatggctggcacaggaaagtatagatcttgaaaatgacctgaagcag
ttagaaactacaatttttgaactttcaggggaagaattcaacatgaactcacccaaacag
cttggagaaattctgtttgaaaaaatgcagctggatccgaaagccaaaaaaacaaagaca
ggacaatatgcaacttcagaagatgttcttcagaaattaagttcaaaacatgagatcatt
aagcatattctggaatacagaacctatcagaaattaaaatcaacctatgtagatgcgctg
ccttcgcagattgataaagaagataacagagtacataccaatttctcacagacgacagct
gctacaggccgtctggcgagtgtaaatccaaacctgcagaatatcccgatccgaactttg
agaggacagcagattcgtggagcctttgtttccggagaagggaagaagattatttctgcc
gattattcacagattgaacttcgtttaatcgctgaaatttcaggagaagataatatgatc
aaagcattccaggacggagaagatattcatgcttccacagcagcaaaactctttaaaatt
cctctggaagaagtctccaaaacccagagaagccaggcaaagactgtaaactttggtatc
atctacggacagggagcttttgcattggcagagcagactggattatcccgtacagaagcc
aaacagatgatcgaagcgtattttgaaacctatccaaaactgaaagaatacatggcggaa
caggtgaataaggcacgtcagatgggctatgtggaaactattttaggaagaaagcgtcac
ttgaaagatatcaattccaacaattttgtagtaagaggtcatgcagaaaggaatgctgtg
aatgcaccggttcagggaagtgccgcagacgttgtaaagcttgcgatgatcaaaatagac
agagaaatcatggaacagcagttaaaaacaaaaatgctgcttcaggtacatgacgaattg
atatttgaatcaccggcagatgaaattgaagccgcttcaaaactcatcaaaactgaaatg
gaaaatgccttaaaaacacaggttccattgttagtagagattggagtaggagacaattgg
ctggaagctcattaa
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