Chryseobacterium sp. JV274: CHRYMOREF3P_4001
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Entry
CHRYMOREF3P_4001 CDS
T08877
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHRYMOREF3P_4001 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrj03019
]
CHRYMOREF3P_4001 (cshA)
03009 Ribosome biogenesis [BR:
chrj03009
]
CHRYMOREF3P_4001 (cshA)
Enzymes [BR:
chrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHRYMOREF3P_4001 (cshA)
Messenger RNA biogenesis [BR:
chrj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHRYMOREF3P_4001 (cshA)
Ribosome biogenesis [BR:
chrj03009
]
Prokaryotic type
rRNA helicases
CHRYMOREF3P_4001 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAD0224295
UniProt:
A0A7U7D0M5
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All DBs
Position
I:4229204..4230916
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AA seq
570 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVDQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSA
TKIEINEKFIPTGEDIIKAQVGGVFEKLLTEHEDLFEFDDSLIPDLSKFTKEELVHQLLQ
FQLKDLALYYKDKHDLAEQKFSSRDDDYSRRDRGRDRDRDRGRDRENSRDRDRGGRDRDR
GGKPRRRDENMVRFFFNLGKKDQLKKLDVLDIINKATGDGKSKKRAEIGDIEILEKFSFF
EVEKSFKDNVLSNIQSMKFKGKDMRAEVAN
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggctacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcaaacagggacaggcaagacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttcgaaggacataaagaattactctaagtacatgaaagac
atcaaaactactgcagtttatggtggaagtagtattgtagatcagatgagatctttgaag
gataaaccacagattattgtgggaactccgggaagagtaattgatcttatcaacagaaag
gcattagacttttctgcgattcattggttagtattagacgaagctgatgaaatgctttct
atgggattcaaagacgaattggaaaccattctaagcgaaactccggaaactaaacaaact
ttcttattctctgcaacgatgaataaagaggtggaaagaatttccaaaaattaccttaca
aaaccacaccgtatttcagtaggttctatcaacgaagtgaagaagaatattactcacgaa
tactatgtagtagggtaccgtcagaaaaaagaagcgttgaagagattgatcgatgctaat
cctaatcagtactccattatcttctgtagaacgagaatggaaactcaggaggtagcagat
ttcttaatgcagaacggttatgcagctgatgctcttcatggtgatctttctcaggcgcag
agagatacggtaatgaagaaattcagattgaaaaacattgatattcttgtagcgacagac
gttgcagcaagaggattggatgtaaactctcttacacacgttattcacttctctttacca
gatgatcctgaagtattcgttcacagaagcggaagaacaggtagagctggaaaagacggt
atttctatggctttgataaagcctgaagaaagcagaaaactgaaacagatcaaatctgca
acaaaaattgaaatcaacgaaaaattcattcctacaggtgaagatattatcaaagctcag
gtaggaggtgtattcgaaaaattattgacggagcacgaggatcttttcgaatttgatgat
agcttaattcctgatctaagcaaatttacaaaagaagaattggtgcaccagctgctacag
tttcaattgaaggatcttgctttatattacaaagataaacacgatcttgctgagcagaag
tttagcagcagagatgacgattactcaagaagagaccgtggacgtgatagagacagagat
agaggccgtgacagagaaaacagccgagacagagatcgcggtggaagagacagagatcgt
ggtggaaagccaagaagaagagatgagaatatggtaagattcttctttaatcttggaaaa
aaagaccagttgaagaagcttgatgttttggatattatcaataaggctacaggtgatgga
aaatccaagaaaagagctgagattggagatatcgaaatcttagaaaaattctctttcttt
gaggttgaaaaatcgtttaaggacaatgtcttgagcaatattcaatcaatgaagttcaaa
ggaaaagatatgagagctgaagttgcaaactaa
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