Chryseobacterium sp. JV274: CHRYMOREF3P_4008
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Entry
CHRYMOREF3P_4008 CDS
T08877
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHRYMOREF3P_4008 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrj03019
]
CHRYMOREF3P_4008 (rhlE)
Enzymes [BR:
chrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHRYMOREF3P_4008 (rhlE)
Messenger RNA biogenesis [BR:
chrj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHRYMOREF3P_4008 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
UvrD-helicase
Cas3-like_C_2
HEM4
AAA_22
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
CAD0224309
UniProt:
A0A7U7HFC4
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All DBs
Position
I:complement(4236305..4237612)
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AA seq
435 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPIL
QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALR
KGIDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQRRQT
LFFSATMPAEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILQND
ISDSVLVFARTKHGADKISRKLQKDDISAEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGNSISFVDGLDLLNLKNTEKL
IGKKIPVIKDHPFHTDDLIAQKRDSNNKPFHAGGEKPKTTGNSNNSRPNNNRKKPSTGAS
VGFKKPKNKNFTRKK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagaacctattgcaaaagcaattcaggaacaggga
tacacgactcctactcctatccaggaaagatcgatccctgatatattagacggtagagac
tttttaggctgcgcgcagacaggaactggtaaaacagctgctttttctattcctattcta
cagaatttatccaaaaataaaattcccaataaacatataaaagcattaatccttacacca
accagagaactggccattcagattgaggaaaacattaacgcttatggtaaatatcttcca
ttaaaacaacttgttatttttggaggggtaaaacaaggaaaccaggaagctgctttgaga
aaaggaattgatattctggtagcaacaccaggaagacttcttgactttattgctcaaggc
atcatcagcttaaaaaaccttgaaatctttgttcttgatgaagcagacagaatgctggat
atgggatttgtacatgatgtaaaaagaatcatcaaacttttacctcagagaagacagact
ttgttcttttctgcaacaatgccggctgaaatccagaaactggctaattctatcctgaat
aatccggtaaaagtagaagtaactccggtttcttctacagcagataccattaaacaatct
gtatattttgtagaaaaagataacaaactgaatttgctttctcacattcttcaaaatgat
atttcagattctgtattggtatttgcaagaacaaaacacggtgcagataagatttcgaga
aaacttcagaaagacgatatttctgctgaagccattcatggtaataaatctcagaatgcg
agacaaaatgctttgaataacttcaaatccggaaaaacaagagttcttgttgccacggat
attgcagcaagaggaattgatattgatgaattgaaattcgtgatcaattttgaactttcc
gatgtttctgaaacctatgtacacagaatcggaagaacaggtagagccggagctgaaggt
aattctatatcttttgtagacggacttgatcttttgaatttaaagaatactgaaaaattg
attgggaagaaaattcctgtgatcaaagaccatccgttccatactgatgatttgattgcc
cagaaaagggattctaacaacaaaccttttcatgcaggtggtgagaaacctaaaacaaca
ggaaacagtaataattcaaggccaaataataaccgtaagaagccttctacaggagcttca
gtaggtttcaaaaagcctaaaaacaagaattttaccagaaagaaataa
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