Chryseobacterium sp. JV274: CHRYMOREF3P_4585
Help
Entry
CHRYMOREF3P_4585 CDS
T08877
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrj
Chryseobacterium sp. JV274
Pathway
chrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHRYMOREF3P_4585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrj03019
]
CHRYMOREF3P_4585
Enzymes [BR:
chrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHRYMOREF3P_4585
Messenger RNA biogenesis [BR:
chrj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHRYMOREF3P_4585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAD0225274
LinkDB
All DBs
Position
I:4857830..4859182
Genome browser
AA seq
450 aa
AA seq
DB search
MEKLTFADFDLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYSKTGNPTVLVLVPTRELVVQVTEIIEKLTENITARVIGIYGGKNINTQKLLF
NDGCDILVGTPGRVMDLSIDNAISLKEVQKLVIDEFDEMLNLGFRPQLTHIFEMMKAKRQ
NILFSATMTEAVDEMLDVYFASPIEISLAKSGTPLEKIEQTAYKVENFNTKINLLEHLLK
SDTDMSKVLIFNNNKRHADMLFTKIDELFPGQFDVIHSNKSQNYRLKAMKSFENEEVRGL
ITTDVMARGLDISNVTHVINFETPDIPEQYIHRIGRTGRADKEGKAVTFVTKKEEPLILD
IELLMDKDLKFNEFPEGVKINPKKIADEEDQIVMKNPAQVKLNDGGGAFHDKKAKNTKEN
WGGPSKRKAPKKFGANRSQQKAISKSKRKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcacttttgcagattttgacctgccggttaaaattcttgatgttttagca
gatttggaattatttgaacctacacccattcaggagaagagcttaaagcctattctttca
ggaagagatgtgatgggaattgcgcagaccggaaccggaaaaacattagcttaccttttg
cccgttctgaaaacatggaaatacagcaaaacaggaaatccaactgttttggtgcttgtt
cctacaagagaattggtggtacaggtaactgaaattattgagaaactgacagaaaatatt
actgcaagagtaatcggaatatacggaggaaaaaatatcaatactcaaaaactattgttc
aacgatggttgtgatattttggtaggaacacccggaagagtgatggacctttccatagac
aatgctatttctcttaaagaagttcagaaattggtcattgatgaatttgatgagatgctt
aacttaggtttcagaccgcagcttactcatatttttgaaatgatgaaagcaaagagacag
aacatccttttctctgcaaccatgacggaagcagtagatgaaatgctggatgtatacttt
gcaagcccaattgaaatttcattggcaaaatcaggaacgccgcttgagaaaattgaacag
actgcttataaagtagaaaactttaatactaagatcaacttacttgaacatttactgaag
agcgatacagatatgtccaaggtcttgatttttaataataataaaagacatgccgacatg
ctctttactaaaattgatgagcttttccctggacagtttgacgtgattcactctaataag
tctcagaactacagacttaaggctatgaaaagctttgagaatgaagaagtgagaggtttg
attactacagatgtaatggcaagaggtcttgatatttccaatgttacgcatgttatcaac
tttgagacaccggatattcctgaacagtacattcacagaatcggtagaacgggtagagca
gacaaagaagggaaagcggttacttttgtaactaaaaaagaagaacctttgattcttgat
attgagctattgatggataaagatctgaaatttaatgaattcccggaaggagttaagatc
aatcctaaaaagatcgctgatgaagaagatcagattgttatgaaaaatcctgcacaggta
aaactgaatgatggaggaggagcattccatgataagaaagctaaaaatactaaagaaaac
tggggtggtccttccaaaagaaaagcacctaagaagtttggagctaacaggtcccaacag
aaagcaatatcaaaatcgaaaagaaagaaataa
DBGET
integrated database retrieval system
