Chryseobacterium sp. KCF3-3: KCF3NO3_07220
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Entry
KCF3NO3_07220 CDS
T11022
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KCF3NO3_07220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrk03019
]
KCF3NO3_07220
03400 DNA repair and recombination proteins [BR:
chrk03400
]
KCF3NO3_07220
Enzymes [BR:
chrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCF3NO3_07220
Messenger RNA biogenesis [BR:
chrk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KCF3NO3_07220
DNA repair and recombination proteins [BR:
chrk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KCF3NO3_07220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
BrxL_ATPase
DUF7022
Cullin_Nedd8
HTH_24
Motif
Other DBs
NCBI-ProteinID:
BFO64739
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Position
809690..811597
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AA seq
635 aa
AA seq
DB search
MISPQDFQKLKYDTLKYFWGYTDFRDSQEEIINAVINEKDTLVLLPTGAGKSLCYQLPAL
LKEGTCLVISPLLALMKDQVNQLKSRGIEAEYLSSELDEYDAEAVYDRCKEGLTKLLYVS
PERLTNSQFIQNMEEIQLSFIAVDEAHCISEWGQDFRPSYQNIKGFRSNNPEIPCLALTA
TATPKVLEEIKNKLELKNPFVFQKSFKRENIKIFTDEVSDKFQRVFDILKYSNDSGIVYV
RTRKEAELLAEFLKKNQLKNVDYFHAGLTTKEKNARQHLWNNSDNHVLISTNAFGMGIDK
DNVRFVIHYSPAASLENYYQEIGRAGRDGKDSFAFMLWNKQELLNFDQVLKNQTPNKAEF
LKIISYLYSIFQVAEFELPEKTFQLNSLSIQNFTKLSKAKINNVLNFLHNQEIVYYNDYK
SLSSLELFIKADEMDQLPQKDAHFIELLFRNISGITTHKVMFSEQQVSNKINISVPLIKE
RLKELQQKNYLEYIDGALASIKFLKPRDERAVNSAYWKLFEHIQRNKIQKWEEMKFYVEN
NDYCKMKLILAYFGEKNSKNCGQCSVCEKNKQSIFGKNISQQIINLLAKKSATIEELSIQ
LSYHSKENILENLIFLLDSGKVRMLNFRTYALNHE
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgatttctccgcaggattttcaaaagctaaaatatgatactcttaagtatttctggggt
tataccgacttcagagattctcaggaagaaattatcaatgctgtcatcaatgaaaaagac
accttggttctactacctaccggagcaggaaagtctttatgctatcaacttccagcctta
ttgaaagaaggaacctgtcttgttatatctcctttgctggcactgatgaaagatcaggtt
aatcagcttaaatcacgtgggatagaagcagaatatctgtcctccgagctggatgaatat
gatgcagaagcagtgtatgaccgttgtaaagaaggacttactaaactactctatgtttct
cctgaaagacttaccaatagtcagtttattcaaaacatggaggaaattcaattatccttc
attgctgtggatgaagctcactgtatttcagaatggggtcaggatttcagacccagctac
cagaatataaaaggattcagaagtaataatcctgaaattccttgccttgctttaactgca
acagcaactccaaaagtgcttgaagaaatcaaaaataagctggaactgaaaaatcctttt
gtttttcaaaagagtttcaaaagagaaaatattaaaattttcaccgatgaagtttctgat
aaatttcaacgtgtttttgatattttaaaatatagcaatgactctgggattgtatatgta
agaacaagaaaagaagctgaactgctggcagaattcctgaaaaagaatcaactgaaaaac
gtagattatttccatgcaggcttaacaaccaaagaaaaaaatgcaagacagcatctttgg
aacaatagcgacaaccatgttcttatttctaccaatgcctttggaatgggtattgacaaa
gacaatgttcgttttgtgattcactattcccctgctgcctctctggaaaactattatcag
gagatcggaagggccggaagagatggaaaagacagttttgccttcatgctttggaacaaa
caggaactattgaattttgatcaggttctaaaaaatcagacacccaataaagctgaattt
ttgaagatcattagctacctctactctatttttcaggtagcagaatttgaacttccggaa
aaaacttttcaactgaatagtctgagtatacagaatttcacaaaactgtcgaaagcaaaa
atcaacaatgtactcaattttctgcacaaccaggaaattgtctactacaacgattataaa
agtctgtcttcacttgaactttttatcaaagctgatgagatggaccagctgccccaaaaa
gatgcccattttatagagcttcttttccgtaatatatcaggcattaccacccacaaagta
atgttcagtgaacaacaggtaagcaacaaaatcaatatcagtgttcctttgatcaaagaa
cggttgaaagaacttcagcaaaagaattatcttgaatatatcgatggggcactagccagt
attaaattcctgaaaccacgtgatgaaagagctgtgaatagcgcttactggaaattattt
gaacatattcagagaaacaaaattcagaaatgggaagagatgaaattttacgtagaaaat
aatgactactgtaaaatgaaacttatccttgcctattttggtgaaaaaaattcaaaaaac
tgtggccagtgttctgtctgtgaaaaaaataagcagtctatctttggtaagaacatttct
cagcaaatcatcaatttattggcaaaaaaatcggctaccattgaagaactgtctatccag
ctcagctatcattctaaagaaaatatccttgaaaatctgatcttccttttggattcagga
aaggtaagaatgttgaacttcagaacatatgcgcttaatcatgagtaa
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