Chryseobacterium sp. KCF3-3: KCF3NO3_12790
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Entry
KCF3NO3_12790 CDS
T11022
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chrk Chryseobacterium sp. KCF3-3
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chrk03016
]
KCF3NO3_12790
Enzymes [BR:
chrk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KCF3NO3_12790
Transfer RNA biogenesis [BR:
chrk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KCF3NO3_12790
Prokaryotic type
tRNA splicing ligases
KCF3NO3_12790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BFO65296
LinkDB
All DBs
Position
complement(1460979..1462370)
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AA seq
463 aa
AA seq
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MGNLKLKGKDILKLGYPNNQSVNVALEVMKRNFATKNIHHVKSLLKEILLNPEEFEKDLT
FGQIAETLLSSKKTEKRMLNSQRASFQIFGNNISEEAKNQLYTALKLPISTQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLEGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDMIPILRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRMATEQCPLPKEAQNFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPESLNSASHGAGRAHSRGECRSLFTQHDIKKELKLKNV
TLMGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatcccaataaccaa
agcgtaaacgtagcattggaagtcatgaaaagaaattttgcaacgaaaaatattcaccac
gtaaaatctcttttaaaggaaattctgctgaatccggaagaatttgaaaaagatctgact
ttcggacaaatcgcagaaaccctgctttcatccaaaaaaacagaaaaaagaatgctgaat
tcacagcgtgcttcctttcagatttttggaaacaatatttcagaagaggcaaaaaatcag
ttatacacagctttgaaactgcctatctctactcagggagcattaatgccggatgcccac
agtgggtatgggcttcccataggaggagttcttgccgtagaaaatgccgtaatcccttat
ggagtaggaatggatattggctgcagaatgagcctcagtattttggatacaccagtttca
tatcttgaaggagcaagagataaatatgaaaaagcgcttgctgaacatacaaaatttgga
atgtatgaaacgcataaatctcacatagatcatgagattttcgacagagatacattcgat
atgatcccgatcctaagaagattaaagggaaaagccatcaaacagatgggatcctcaggt
ggaggaaatcactttgtagaattcggggaagtggaaatcactgaagaagacgaacaaatt
ggccttccaaaaggaaaatatctgggaatactttctcacagtggctcgagagggctggga
gcagaaatcgcacagtattattcaagaatggcaacggaacaatgtcctttaccgaaagaa
gctcaaaacttcgcatggctggaccttagtacccatcttggactggaatactggacggca
atgaatcttgccggagattatgcttcagcctgtcatgatgatattcacagaaggcttgta
aaagcagtcggtggaagagtaaaagcgagaattgagaaccatcacaattttgcgtggaaa
gaaattcataacggaaaagaagtgattgttcatcgaaaaggagctactcctgctaatgaa
aacgaattgggaatgattccaggatcgatgactgcaaaaggatttatcgttcgcggaaaa
ggaaatcctgaatctttgaattcagcatcacatggtgcaggaagagcccattcaagagga
gaatgcagaagtcttttcactcagcatgatatcaaaaaagaactgaaactgaaaaatgtc
acattgatgggcggaaatgcagaagaagcaccaatggcctacaaagacattaatgaggtg
atgaatgcgcagagtgagctggtagatattctgggaacattccagccgagaattgtgaga
atggataagtaa
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