Chryseobacterium sp. KCF3-3: KCF3NO3_19110
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Entry
KCF3NO3_19110 CDS
T11022
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KCF3NO3_19110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrk03400
]
KCF3NO3_19110 (mfd)
Enzymes [BR:
chrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCF3NO3_19110 (mfd)
DNA repair and recombination proteins [BR:
chrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KCF3NO3_19110 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
BFO65928
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All DBs
Position
2199296..2202664
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLMQKEFGKEIFTQLENSQHIAVKGSAGSSVSIFVAELFLVQKKNILY
LVDDKEDALYANTEMEDLLGKDKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQADFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSVDKVKDFQLVSNMNFSVTGT
RVSLLQLLPKESFVVSKNGMVGMQKIRTFYEKSLEKYDTLSKDIAHRTPQELFISDQEFL
FDYKKFKTVDFGGVIIEGLKEVTEVKMEQLPQPSFHKNFELLIEDIEEKQNGGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREIVLSKLGSPTWKSLKQKTKAKVKQIAFDLIQLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATVDVKRDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKSETLEALKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEETLRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFESLFENEEDR
QKLFKSVKDVNIDTDLELMLPDSYISNTEERLLLYQKIAEITNEADLHQFELELIDRFGA
LPKEAVNLLKSVSLKWLASDIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIINYLTR
NPAEAQLKEKSGKEGNQLMMRKERVKNVDEVNLLLKAIIEHD
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcaatgaaaagttccttccagaccttatgcagaaagagtttggg
aaagaaatttttacccagttagaaaacagtcagcatattgctgtaaaaggaagtgcagga
tcttcagtttctatttttgtagctgagctctttttggttcagaagaagaatattctttat
ctggtagatgataaggaagatgcattgtatgccaatacagagatggaagatcttctgggt
aaggataaagtgctgtattttccggcaacccatcttgaaccttatcaggtagaaaagact
caaaatgccaatctggtgttaagaactgaggttcttaataaaatcaattccggaagatct
ccgaaagtgattgtggcttatgctggtgctttatctgaaaaggttttgaaaaaagaagat
ttcaaagcaatttctcatcatattaaagtgggagatcagctggattttgattttgtggac
gaactgcttaatcattatcatttccagcaggctgatttcgtttctgaaccgggagaattt
tcagtgagaggaggaattgtagatgtgttttcctattcatatgaaaagccatacaggatt
accttctttgggaatgaagtggaaagcattaaaacttttgatatcgaaacacagctttcg
gtagataaagtaaaggatttccagttggtttccaacatgaatttttcagtaacgggaaca
agggtttctctcttgcagctattgcctaaagaaagttttgtagtttctaaaaacggaatg
gtgggaatgcagaagatcagaacattctacgaaaagtctttggaaaagtacgatacatta
agtaaagatattgcccacagaaccccgcaggaactttttatttctgatcaggaatttctc
ttcgattataaaaaattcaaaacggttgattttggaggagtaatcattgaagggttaaaa
gaagtaaccgaagttaaaatggaacagcttccacagccttcttttcataaaaactttgaa
ctactgattgaagatattgaagaaaagcagaatggaggatttgatacctggatttctttt
tcaacagaaaaacagaaagaaagactggaatctatctttgaagagcttgaacacgagctt
ccatttaaaagttttaaatctgaacttcatgaaggatttgtagataacggacacaaactg
ctggtttatacggatcatcagatctttgaccgttatcagagatataaagcgaaaaatact
tttgcaaaatctgagcagcttaccctgaaagacctgatgtctctgaaaattggagattat
attgctcacattgatcatggaatcgggaaatttatgggattggtgaaagtgaataatgac
ggaaagattcaggaatgtttcaaactgacctataaaaatggagacttattatatgtaagt
attcactctttacataaaatatcgaaatacaacggaccggatggaagagagatcgttctg
agtaaacttggatctccaacctggaaatctttaaaacagaaaacaaaagcgaaggtaaaa
cagattgcttttgaccttattcaattatatgcccagaggaaaacggcaaaaggttttgct
tatactccggattcttatctgcagaacgaattggaggccagctttatttatgaagatact
ccggaccaggaaaaagctaccgtagatgtaaagagagatatggaagcggatacggtaatg
gacagacttgtttgtggtgacgtaggtttcggtaaaacggaagttgcgatcagagcagcg
tttaaagcggcaacagatggtaagcaggttgcggtattggttcctactactatccttgct
tttcagcattaccgaagttttaaagaaagacttaaagattttcctgtcaacgttgcttat
gtcaatagattcagaacagctaagcagaaatcggaaactttagaggctttaaagaacggg
aaagtagacattatcatcggaacgcatcaattggtaagcagttcggtgaagtttaaagat
ctgggtttattaattattgatgaagaacataagttcggggtttcagtaaaagataaactg
aaaactctgaaaaataatgtggataccctgacgcttacggcaactcctattccgaggact
ttacagttctcgttaatggcagcaagggatttatccgttatcaaaacaccaccaccaaac
agacagcctgtagatacccaattaatcggattcaacgaagaaacgcttcgtgatgctgtt
tcttacgagcttcagagggacgggcaggtttactttatcaataacagaattgaaaacctg
aaagatattgcaggacttattcagaggctggttccggatgcaagagtgattacaggacat
gggcaaatggaagggaagcagcttgaaaagaatgttctggattttatggaagggaaatat
gacgttcttgtgtccactaccatcgtagaaagtggggtagatgttccgaatgccaatact
attttcatcaatgatgcgcaaagatttggaatggcagatctgcatcagatgagaggaagg
gtaggacgtagtaacagaaaagcattctgttatctgattactccgccatatgatatgatg
acttcggatgccagaaaacgtttggaagctattgaacagttttcagatctgggaagtggt
ttccagattgcgatgaaagatctggagattcgtggtgccggtgatcttttgggtgctgaa
caaagtgggtttatcaatgaaatggggtttgaaacgtatcagaaactaatgcaggaagct
ttagaagaattaaaagacgatgctgattttgaaagcctttttgaaaatgaagaagacaga
caaaaacttttcaaatctgtgaaggatgtcaatattgataccgatttagagttgatgtta
ccggattcatatatttctaatacagaagaaaggctgttgctgtatcagaaaattgcggaa
attactaatgaagcagaccttcatcagtttgagctggagctgattgaccgtttcggagca
ttgccgaaagaagctgtcaaccttttgaagagtgtttccttgaagtggcttgcttctgat
atcggttttgaaaagattgtcatgaaaaacggagtgtttttaggatacttcccggggaat
cctcaggataagttttatcagacagacagattccgacatattattaattatctgacccga
aatccggctgaagcccagcttaaagagaagtcaggaaaagaaggtaatcaattgatgatg
aggaaagaaagagtgaaaaatgtagatgaggtcaatctgttgttgaaagcaattattgaa
catgattaa
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