Chryseobacterium sp. KCF3-3: KCF3NO3_21110
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Entry
KCF3NO3_21110 CDS
T11022
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03410
Base excision repair
chrk03430
Mismatch repair
chrk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KCF3NO3_21110 (recJ)
03430 Mismatch repair
KCF3NO3_21110 (recJ)
03440 Homologous recombination
KCF3NO3_21110 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrk03400
]
KCF3NO3_21110 (recJ)
DNA repair and recombination proteins [BR:
chrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KCF3NO3_21110 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KCF3NO3_21110 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KCF3NO3_21110 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DSPc
Motif
Other DBs
NCBI-ProteinID:
BFO66128
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Position
complement(2421065..2422777)
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AA seq
570 aa
AA seq
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MSQKWIYKPEPDEEVVDRLSSSLGFGTFESKILVLRGIDNYQKAREFFKPNLNDIHNPFL
MADMQKAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKKYLDYYIPDRNS
EGYGISTEGIDFAKENGFSLIIALDCGIKALDMINYASNLDIDFIICDHHLPGEEIPNAA
AVLDPKRNDCRYPFKELSGCGVGFKLCQGLNTIYKLPEAELFELTDLLAISIAADIVSMT
GENRVLAKMGLKTLRKTRNLGLRLLIPEDKLSHFEISNIVFEIAPKINAAGRISHGKAAV
ELMVSDNLKHANQIVNDIMNLNDERRELDMNSTLSALNQIIESQQETKHTTIVYHPEWNK
GVIGIVASRLIETYYKPTLVFTDGNNGEMVASARSVSDFDVHEALDLCSEYFLKFGGHHA
AAGLSMEKDKFDAFKEKFERIVSEKIKDHQKEPSITIDTEIKVDEINREFINFHRKLAPF
GPHNMKPIFTLTDQKLSGYVKTMGKDNNHLKFYIRQESTGRNIECVGFKLGQFVEDFKNK
SFDLAFTLEENHWKGNVTHYLNIKDVKFRE
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaaatggatttacaagcctgaacccgatgaggaagttgttgacagactaagt
tcgtcacttggttttggtacttttgaatctaaaatcctcgttctaaggggaattgacaat
tatcaaaaggccagagaattcttcaaacccaaccttaacgatatacacaatccgttttta
atggcagacatgcaaaaagctgtagagcgtattgccaccgctattgaaaatggagaaaaa
atattggtatatggtgactatgatgtggacggaaccacagctgttgctttgatgtacctt
tatctcagcaaaattgttgagaaaaaatatctggattattatattcctgacagaaattct
gaaggatatggaatttccacggaaggaattgattttgccaaagaaaatggtttttcatta
atcattgctctggactgtggaatcaaagcacttgatatgatcaactatgccagcaatctg
gatatcgattttattatttgtgaccatcaccttccgggtgaagagattcctaatgctgca
gctgtacttgacccaaaaagaaatgactgccgatatcctttcaaagaactttcaggatgt
ggtgttggttttaagctttgccagggacttaataccatttataaattaccggaagcagaa
ttatttgaactgacagaccttctggcaatctccattgcagcagatattgtttccatgaca
ggagaaaacagagttctggctaaaatgggattaaaaaccctcagaaagaccagaaatctt
ggtttaagattattgattcctgaggataaactttctcattttgaaatttccaatattgtt
tttgaaatcgctcctaaaattaatgctgccggaagaatttctcatggtaaagctgctgta
gagcttatggtttctgacaatctgaaacatgccaatcagattgtaaatgatatcatgaat
ctcaacgatgaaaggcgtgagctggatatgaattccacactttctgctttaaatcagatt
atagaatcccagcaggaaaccaagcatactacaattgtttatcatcctgaatggaataaa
ggtgtaattggtattgttgcctcaaggcttattgaaacctattataaacctacccttgta
tttactgatggtaataatggggaaatggtagcttctgcaagatctgtttctgattttgat
gtacatgaagcccttgatttgtgttctgaatatttccttaaattcgggggacatcatgct
gcggccggactttcgatggagaaggataaatttgatgctttcaaggaaaaatttgaaaga
attgtttctgaaaaaatcaaggatcatcagaaagaaccttctattacgattgatacagag
attaaagtagatgaaatcaacagagagtttatcaatttccacagaaaactggctccattt
ggacctcataatatgaaacctatttttacattaacggatcagaaactttccgggtatgta
aaaacaatgggaaaagataataatcacctgaagttctatatcagacaggaatctacagga
cgaaatattgaatgtgtcggattcaaactgggacagtttgttgaggattttaaaaataaa
agtttcgaccttgcttttaccctggaagaaaatcactggaaaggcaatgtaactcattat
cttaatattaaggatgtaaaatttagagagtaa
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