KEGG   Chryseobacterium sp. KCF3-3: KCF3NO3_29470
Entry
KCF3NO3_29470     CDS       T11022                                 
Symbol
dnaE_1
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
chrk  Chryseobacterium sp. KCF3-3
Pathway
chrk03030  DNA replication
chrk03430  Mismatch repair
chrk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:chrk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KCF3NO3_29470 (dnaE_1)
   03430 Mismatch repair
    KCF3NO3_29470 (dnaE_1)
   03440 Homologous recombination
    KCF3NO3_29470 (dnaE_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:chrk03032]
    KCF3NO3_29470 (dnaE_1)
   03400 DNA repair and recombination proteins [BR:chrk03400]
    KCF3NO3_29470 (dnaE_1)
Enzymes [BR:chrk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     KCF3NO3_29470 (dnaE_1)
DNA replication proteins [BR:chrk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     KCF3NO3_29470 (dnaE_1)
DNA repair and recombination proteins [BR:chrk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     KCF3NO3_29470 (dnaE_1)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 RNase_T tRNA_anti-codon DUF2857
Other DBs
NCBI-ProteinID: BFO66964
LinkDB
Position
3398869..3403539
AA seq 1556 aa
MYLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQVHDDDGNLIENQDYIIKPEGYDIPF
NAARIHGITTKIANEEGRDLQEILEEFSKVLERVRVVSGHNVEFDYNIVGAEFYRKNLKD
NLQEKPKADTMILGTDFCQLGGGRGGRFKPPKLEELYEKLYGNKFDEAHNAAADVNATAR
AFFEMVRIGVVPAETLKISEDQLAYFRSLYPDPIKPFNIVIRRQVADFHNKKKQQDFGSI
DEIDLGKYFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVE
GANGDRAKKHKEYLAKKQEAEENGTEFNEAEPVSEPLIPVVGCEFYISERYEQKQFTKDD
PDRRTQVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQYKEGVIALTSGIMG
DIPDAILNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYDVKIL
AQNETFYTNKDDSNIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYFIKNSEEIKEAFL
AYPDAFDAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDELDGGKRGEMAYLTYLTYE
GAKRRYDPYDGITDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARNMGVWVGPGRGSA
AGSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDKIIKWVVEKYGKT
QVAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPPSPGMNIAKALAKYDKLKPEE
QMLVDEMRYVLDSPDDARHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAK
DADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARYDIDIDPDLIPLDDTKT
YQLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGI
EEIVYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKM
YPKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAYLKANYPAEYM
ASVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGE
GPSEGITRERENGRFKNIYDFFERIMPSQMNKRVAESLVLAGAFDELDSFHRGQYFDIDM
AGKTNLERLIRYGQSFQESKNEMEHSLFADFAEEVQIEQPKLAPCPEWPNMHKLNKEKEI
IGFYLSAHPLDEFKYQFQFMQGQLSKKSVLEKNEEDKVVTDEAPILEQDTQDDAADLTEI
VSDDVVAGEEEVVEEVTKKAEPKGNFLFLNLDEVDAYKEQAFSNKQEELFEEKKKDWKTL
QKERENGGGGKEYTVAGLITEYVVKDGFRSGEKVAFVTLEDYSGSYSFRLGDRDYMRLKE
KLEVQRFVIFKIKFAQVKDGRVFVNVNDVIELQEAFERFAKSISLVMDVMDVRREDLDFF
RTVLDRNKGNQKLKFFIKNMEDGSDIEVQSMKHSVDLNGDLIKEIQLLNKYEFYLN
NT seq 4671 nt   +upstreamnt  +downstreamnt
atgtatttaatttttgacacagaaacaaccggtttaccaaaaaatttcaacgctccgctt
tcagactcggataactggccaagaatggttcagattgcatggcaagtgcacgatgatgac
gggaacttgattgaaaaccaggattatataataaaacctgaagggtacgatattcccttc
aacgcagcacgtattcacggaattacaaccaagattgccaatgaagaaggacgggatctt
caggagattcttgaagaattttctaaagttctcgaaagggtaagggtggtttccggacat
aatgtagaattcgactataatattgtaggggcagaattttatagaaaaaatctgaaagat
aatcttcaggaaaaacccaaagcagataccatgattttgggaaccgacttctgtcagctt
ggtggaggacgtggagggagattcaaacctccgaaacttgaagaactttatgaaaaactt
tatgggaacaaatttgatgaagcccataatgctgctgccgacgtaaatgctactgccaga
gctttctttgaaatggtaagaattggagtagtacccgctgaaaccttaaagatttcagaa
gatcagcttgcttatttcagaagcctttatccggatccgattaagcctttcaatattgtt
atcagaaggcaggttgctgattttcataataagaaaaaacaacaggatttcggaagtatt
gatgaaattgatttaggtaaatatttcaattttgataatcacagtgttttctcaacactt
accgctacttctagcatcaatgatttgattaaaaaagcttctgatgaaaacttcccggct
gtcggaatggtggatctcggaaatatgatgggagctttcaagtttgtttcagcagtagag
ggagctaatggagacagagcaaagaaacataaagaatacctggcgaaaaagcaggaagca
gaagaaaacggaacagagtttaatgaagccgaacctgtttccgaaccgcttatacccgtt
gtaggttgcgaattttatatttcagaacgttatgaacaaaagcaatttaccaaagatgat
ccggacaggagaacgcaggtagtgcttttggcaaaagactttaatggttataaaaacctg
gcaaagctttccagtataggatttctgaaaggattttattttggggttccaagggtgagc
agagaattgatagcccaatataaagaaggagtgattgctttgacttccggaattatggga
gatattcctgatgcgattttaaataccggtgagcagaaaggagaagaacttttcaaatgg
tggaaagatacttttgaagatgatttttatgttcagattcagaatcacaaactgcctgaa
gaagagcatttgaatgaggttcttttatatctggctgataaatatgatgttaaaattctt
gctcagaacgagactttttacaccaataaagatgattctaatatccaggatattgtaagc
tgtatcaaagatggtgaaaagctgacaacacctattggtaagggatttggtaaaagaaga
gggttggctacaggtgaatattttattaaaaattctgaagaaataaaagaagctttttta
gcttatcctgatgcttttgatgcttatgaagagtttacagcaaagtttaaaccatatact
ttaaaaagggacgttctccttccgaagtttgatattcctgaagaatttatccacgcagaa
gatgagctagacggaggaaaaagaggagagatggcttatcttacctatcttacctatgaa
ggagcgaaaagaagatatgatccatatgatgggattactgatgaaattaaagaacgtctt
gacttcgagcttgaagtaattgccaataccggttatccgggatatttccttattgtacag
gatttctgtaacgaagctcgtaatatgggtgtttgggttggtcctggaaggggttctgct
gcaggatctgcggtggcttactgtatcggaattaccaatgtagatccgattaaatatgat
ctcctttttgagagattcctgaatcctgaaagggtttccatgcctgatattgatattgac
tttgatgatgaaggacgagataaaattatcaaatgggtagttgaaaagtatggtaaaact
caggtagcacagattattacctactcagtgttgggtggaaaatctgctattaaagatgcc
ggaagagttttggatgttccgattcctgacacgaataatattgctaagctgattcctccg
agtccggggatgaacattgcgaaagctttagcaaaatatgataaattaaaaccggaagaa
cagatgctcgtagatgaaatgagatatgttcttgatagtcctgatgatgcacgacatgga
gttttggcaagtgccaaaaagatggaagggtgtatcagaaataccggaattcatgcctgt
ggagtaatcattacacctgaagatgtgagtaatctggttcctgtgaccattgctgcgaaa
gatgctgatatcttagtgtcgcagtttgataactccgttgcggaaagtgcaggacttctg
aagatggacttcctggggttgagaactctgactattattaaagatgcattgaagctggta
aaagctagatatgatatagatattgatccggatcttattccgcttgatgataccaaaacg
tatcagttgttcaaagaaggaagaacggttgggattttccagtatgaaagtcctgggatg
caaaaatatatgagggagcttaagccaacggtttttgccgatcttattgccatgaacgcc
ttgtaccgtccaggtccgattaaatatattccaaacttcatcaacagaaagcatgggatt
gaagaaattgtttacgatttaccggaaacagaagaatatttaaaggaaacatacgggatt
accgtttatcaggagcaggtaatgcttttatctcaaaaactggccaactttaccaaaggt
gaagccgatactttgagaaaagcgatgggtaaaaagcagattgatgttcttaataaaatg
tacccgaaattcattgaaggtggtagaaaaaacaacctgaatgaggaaagattagagaaa
atctggaatgactggaaagcctttgcggaatatgctttcaacaaatctcactcaacctgt
tatgcgtttattgcttatcagactgcttatttaaaagcgaattatcctgcggaatatatg
gcgagtgtaatgagtaataacattaataatacggattctattaccatgttcatggaagat
tgtaagagtatgggagttgatgtattaggaccggatgtaaacgaatctcaatacaagttc
tccgtaaacgaaaaagggcagatccgtttcggattgggagcaatcaaaggaattggtgaa
gggccaagcgaaggaattacaagagaaagagaaaacggaagatttaaaaatatttacgat
ttctttgaaagaataatgccttctcagatgaataagagggtagcggaaagtttagtgctt
gccggagcttttgatgaactggattctttccacagaggacagtattttgatattgacatg
gctggaaagactaaccttgaaagacttatcagatacggacagagcttccaggaaagcaaa
aacgaaatggagcattccttatttgctgattttgcggaagaagttcagattgagcagccg
aaattagcgccttgtccggaatggcctaatatgcataagcttaataaagaaaaggagatt
attggtttctatctttctgcacatccactggatgagtttaaatatcagttccagtttatg
caggggcagctttctaaaaaatctgttcttgagaaaaatgaggaagataaagtagttacg
gatgaagcgcctattttggaacaggatactcaggatgatgctgcagatcttacggaaatt
gtatcagatgatgttgtggcaggtgaagaggaagtcgtggaggaagtaacaaaaaaagca
gagcctaaagggaatttcctattcctgaatctggatgaggtagatgcttataaagaacag
gctttttccaataaacaggaagagttgtttgaagagaaaaagaaagactggaaaaccctt
cagaaagaaagggaaaatggcggcggcggtaaagaatacactgttgctggcctgattacg
gaatatgtggtgaaagatggcttcagaagtggtgagaaagtagcttttgttaccctggaa
gattattccggatcgtattcattcaggttgggagacagagattatatgagattgaaggag
aagctggaggttcagagatttgttatttttaagatcaaatttgctcaggtaaaggatgga
agagtctttgtgaatgtaaatgatgtgatagaacttcaggaagcatttgagcggtttgca
aaaagtatttctctggtgatggatgtgatggatgtaagacgggaagatctcgactttttc
agaacagttctcgacaggaataaaggaaatcaaaagctgaaattctttattaaaaacatg
gaagatggttctgatattgaagtgcagtctatgaagcattcagtggatcttaatggagat
ttgattaaagaaattcaacttcttaataaatatgagttttacttaaactag

DBGET integrated database retrieval system