Chryseobacterium sp. KCF3-3: KCF3NO3_42930
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Entry
KCF3NO3_42930 CDS
T11022
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KCF3NO3_42930 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrk03019
]
KCF3NO3_42930 (recQ)
03400 DNA repair and recombination proteins [BR:
chrk03400
]
KCF3NO3_42930 (recQ)
Enzymes [BR:
chrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCF3NO3_42930 (recQ)
Messenger RNA biogenesis [BR:
chrk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KCF3NO3_42930 (recQ)
DNA repair and recombination proteins [BR:
chrk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KCF3NO3_42930 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
BFO68310
LinkDB
All DBs
Position
complement(4962286..4964490)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEQIIDNLLNGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVA
PESLIKDDYLDFLKEVKISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIANVPVIALTA
TATPKVQDDIQKTLGMTNALVFKESFNRPNLYYEVCPKINVDKEIVKFINQHKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGESFDPVNGDGAKMCDNSSNPPKLKDATTDLEKS
LALINDTGEKFKSKDLISVIVGKENAVTKSYKLEQSSHFGFGKDEKDNYWKTILRQATVQ
NFLQKDIETYGVLKITEKGKSVLNGKSKDIFLIAEDREFDLTQAKAESDQVQQQAGGGLD
QNLFNLLKELRKKVAKKHGIPPYTVFMDPSLEDMTVQYPISVDEITKIYGVGEGKAKKYG
KEFADYIKTYVEDNNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMDE
LLKEMERIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMNESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgaattgaaaaagtattttgggttttctaca
tttaagggccagcaggaacaaattatagacaacctattgaatgggaaggatatatttgtt
ttaatgcctacaggtggcggaaaatcattatgttatcagcttccggcacttatttcggaa
ggaacagcaatagtagtttcgcccttaatagcgttgatgaaaaatcaggtagatgcggtg
aacggtctttcatcagatgatggagtagcacatgtactgaattcatcattaaacaaaacg
cagaccaagcaggtttttgacgatatcaaaagcggcaaaaccaaacttctgtatgtagct
cctgaatcattaattaaagatgattacctggattttttgaaagaagtgaaaatttctttc
tttgctatcgacgaggcccactgtatttcagagtggggacatgatttcagaccggaatac
aggaatctgaaacagattattgacaaaatcgccaatgtaccggtgattgctttaacggct
actgctactcctaaggttcaggatgatatccagaaaactttaggaatgaccaatgcattg
gtgtttaaagaaagtttcaaccgtcctaatctatattatgaagtatgtcctaaaatcaac
gtagataaggaaatcgttaagtttattaaccaacataaaggaaaatcaggaattgtttac
tgcctgagccgtagaaaagttgaagaatttgcccagcttctgcaggtgaatggaatcaat
gcgcttccttatcatgccggtcttgaccaaaaagtgagagtagccaatcaggataaattc
ctgatggaagaagtggatgtaattgtggccaccattgccttcgggatgggaattgataaa
ccggatgtccgatttgtaattcattacgacttcccaaaatcattggaaagctactatcag
gaaaccggaagagcaggaagagacggaggtgaaggccattgtctggcattctatgacccg
aaagacattgaaaaactggagaaattcctggctcagaaacctgtttcagaaagagaaata
ggattacagcttttgaatgaagtggtaggctatgctgaaacttccatgagcagaagacaa
tatattctatactattttggggaaagtttcgatccggtaaacggagacggagctaaaatg
tgcgacaattcatccaatcctccaaaattaaaagatgctacgacagatctcgaaaagtca
ttggcgttgattaatgatacaggagaaaaattcaaatctaaagacctgatttcggttatc
gtaggaaaagaaaatgcagtaacgaaatcttataaattggagcaaagttctcactttggt
tttggaaaagacgaaaaagataattactggaaaacaattttgagacaggcgactgttcag
aattttttacagaaagatattgaaacctacggggttttaaaaattacagagaaagggaaa
agtgtcctgaatggtaaatctaaagacatctttttaattgctgaagaccgtgaatttgat
cttactcaggcaaaagctgagagtgatcaggtacagcagcaggctggaggaggactggat
cagaaccttttcaatctgttgaaagaattgagaaaaaaagtagccaaaaaacacggtatt
ccaccatacacagtatttatggatccaagtttggaggatatgacggttcaatatccaata
agtgtagatgagatcaccaaaatctatggtgtaggtgaaggaaaagccaaaaaatacggt
aaagaattcgcagattacatcaaaacatacgtagaagataacaacatcgaacgtactcag
gatatggtattgaagcaggtggccaataaatccagccataaagttttcatcatccagagc
actgataaaaagattgaccttgaagatatagcaagagctaaaaacctttctatggatgaa
cttctgaaagaaatggaaaggattgtttatcagggaacaaagctgaatatcgactattat
attgaagataattttgatgaagacattgtagacggattcatggaattcatgaacgaatct
gaaagtgacagtatgaaagtattgctggatgaattcggggatgaactgtctgatgaagaa
gtaagaatgttgagaattaaattcattagtgacgtagcgaattaa
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