Chryseobacterium sp. KCF3-3: KCF3NO3_46730
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Entry
KCF3NO3_46730 CDS
T11022
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03420
Nucleotide excision repair
chrk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KCF3NO3_46730
03430 Mismatch repair
KCF3NO3_46730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrk03400
]
KCF3NO3_46730
Enzymes [BR:
chrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCF3NO3_46730
DNA repair and recombination proteins [BR:
chrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KCF3NO3_46730
MMR (mismatch excision repair)
Other MMR factors
KCF3NO3_46730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C
AAA_30
TK
UvrD_C_2
DUF2810
Motif
Other DBs
NCBI-ProteinID:
BFO68690
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Position
complement(5404030..5405922)
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AA seq
630 aa
AA seq
DB search
MTKRLNSPDTEADVKLKTCLDKFPRVSFNMIAGAGSGKTTSLVKALNHIITTKGDVLRRR
GQQVACITYTEIAAQEIWNDVENNPLVHVSTIHSFLWTIIKPFQKDIKKWVIQRIGEKQF
DIKSKIDNPRTRISKDKLYRQLEKLNSQALTIESIPYFGYGTGSNYSKGILGHDDIIKLA
ISMIEDFKMLGTIVSQKYPYIFVDESQDTFPNIVTTFKKIDSLHSETFCLGFFGDPMQKI
FPTGVGEIPIEEKWETITKPENFRCSQQVLKTVNAIRKPADGLEQIGGRIEEGEPVEGSS
QIFILPIDEFRTENMNKVQQWMAESQKDVSWLSDNVKILVIVHRMAAIRLGFPNLYASMN
DTAPSAFKDGLLDGSAWPLKPFMNFVLPVVEFCNKGSNFDILNILRNQCPKLSNGTLKGT
ELRKALVELKIATDKLIEMMDISSNSTVLDVFKIIQDNNLIVLDERIVAHLNGTIASEFI
EQNDGDDDSLAIEIDAMQRYFACKANEFLGYKKYCDDGSPFATQQGIKGAEFEKVITILD
DDESSHNLFSYDKYFGIIPLSDTDEKNIEDGKDNVIARTRRLFYVSCSRARKDLVVIYFN
ADVDVAKKLIGATDIFATANIYTVKNLSQN
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaagattaaattctcccgatactgaagctgatgttaaattaaaaacctgttta
gacaaatttcctcgagtaagttttaatatgattgctggtgcaggttcaggtaagacaaca
tcacttgttaaagcattaaatcatataatcacaacaaagggggatgttttgagaagaaga
gggcaacaagtagcttgtattacttatactgagatagctgcacaagaaatttggaatgat
gttgaaaataatcctcttgtgcatgtttctactattcatagctttctttggactataatc
aaacctttccaaaaagatattaagaagtgggtgatccagcgtatcggtgaaaaacagttt
gatataaaatcaaaaatagataatccacgtacaagaatatccaaagataagctttataga
caattagaaaaattaaattctcaagcattaacaatcgaaagtataccttattttggttac
ggtacaggtagtaattatagtaaaggtattcttggacatgatgatattattaaattggcc
atttcaatgattgaggattttaaaatgcttggtacaattgttagtcaaaaatatccatat
atattcgttgatgaaagtcaggatacttttccaaatatagttaccacatttaaaaaaatt
gattcattacatagcgaaacattttgtttgggtttttttggggatcccatgcagaaaatt
ttcccgactggtgttggagaaattcctattgaggagaaatgggagacgattactaaacca
gagaattttagatgctcacaacaagtattaaaaactgtaaatgcaattagaaaaccagca
gatggattagagcaaataggaggacgtattgaggaaggtgaacctgtagaaggaagttca
caaatatttatattaccaatcgatgaattccgaactgaaaatatgaacaaagttcaacaa
tggatggctgaaagtcaaaaagatgtatcatggctgtctgataatgttaaaattttagtt
attgtccatagaatggctgcaattagattaggattccctaatctttatgcttcaatgaat
gacactgcgccttctgcatttaaagatggacttcttgatggtagtgcttggccactcaag
ccatttatgaattttgttcttccagtcgtagaattttgtaataagggatcaaatttcgat
attttaaatattcttcgtaatcaatgtccaaaattatcaaatgggactttaaaagggacc
gaactacgaaaggctttggttgaactaaaaatagccactgacaaattaatagagatgatg
gatatttcatcaaactctactgtactagatgtatttaaaattattcaagataataatctg
atcgttttggatgaaagaatagttgcccacttaaacggaacaattgcaagcgagtttatt
gaacaaaatgatggtgatgatgattctttagctattgagatagatgcaatgcaaagatac
tttgcatgtaaagcaaacgaattcttaggttataaaaaatactgtgatgatggatctcca
tttgcgacacagcaaggtattaaaggagctgaattcgaaaaagtcattacaattttagat
gatgatgaaagttctcataatcttttttcatatgataaatattttggtattatacctctt
tcagatacagatgaaaaaaatattgaagatggaaaagataatgtgatagctagaaccaga
agacttttttatgtttcttgctcacgagcgagaaaggatctggtggtaatatattttaat
gcagatgtcgatgttgctaaaaaactaattggagctactgatatttttgctactgctaat
atttatactgttaaaaatttatctcaaaattga
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