Chryseobacterium sp. KCF3-3: KCF3NO3_47690
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Entry
KCF3NO3_47690 CDS
T11022
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrk Chryseobacterium sp. KCF3-3
Pathway
chrk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KCF3NO3_47690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrk03019
]
KCF3NO3_47690
Enzymes [BR:
chrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KCF3NO3_47690
Messenger RNA biogenesis [BR:
chrk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KCF3NO3_47690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
UvrD-helicase
AAA_22
Flavi_DEAD
AAA_19
AAA_30
UTP25_NTPase-like
NACHT
Motif
Other DBs
NCBI-ProteinID:
BFO68786
LinkDB
All DBs
Position
complement(5533840..5534556)
Genome browser
AA seq
238 aa
AA seq
DB search
MNFKNLNLINPIIRAVTEAGYSRPTEIQYSVIPHILAGRDIVVSAQAGAGKTAAFAMPIL
QLLKRQTPDHKEIRTLILTPTQELAIQIEENFKIYSKYLPLSLLSIYEGVSIGSQLAALR
KRVDVLVATPGGLLDVENQRHIDLSKIELFVLDDADKMLDMGFANHIKKIVNLVSHRRQN
LLFSATMPGSLKYFAKTILNNPVEIISDPASSIPQTVKCPDLKNIQPLAGSTIPVRIS
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaaaatttaaatctaattaatcctattatccgtgcagtgacagaagccgga
tattccaggcctactgaaatacagtattctgtaattccgcatattttggcaggaagagat
attgtagtgtctgcacaggcaggtgctggaaaaacagctgcctttgctatgcctatttta
cagctgctgaaaagacaaactccggatcataaagaaatacggactttaatacttacaccc
actcaggaactggcaatacaaatagaagagaattttaaaatctacagtaaatatttacca
ttatctctgctttctatttatgaaggggtttccattggaagccagcttgcagcactgaga
aaaagagtagatgttcttgtggcaacacccggaggattacttgatgtagaaaatcagaga
catattgatctttctaaaattgaactatttgttttagatgatgccgataaaatgcttgat
atgggattcgctaatcatataaaaaaaatagtgaatcttgtttctcatagaagacaaaac
ctgcttttttctgctacaatgccgggaagtttaaaatattttgccaaaacaatcctgaac
aatcctgtagagattatttcagatcctgcatcttcaataccacagacggtgaagtgcccg
gatcttaaaaatattcaaccactggcgggaagcacaatacctgtcagaatatcataa
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