Chromobacterium paludis: FYK34_00690
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Entry
FYK34_00690 CDS
T06224
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYK34_00690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_00690
Enzymes [BR:
chrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FYK34_00690
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FYK34_00690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QEL54205
UniProt:
A0A5C1DC27
LinkDB
All DBs
Position
133894..135219
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AA seq
441 aa
AA seq
DB search
MLFSELGLSPEILRAIEEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQ
TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP
KERQTLLFSATFAPEIKRLAADFMRSPQTVEVARQNATNDQVEQLVYQVDSFKKRQLLAH
LIRSREMSQVIVFCKTKISADQLSRDLKRDGLNAEAIHGDKTQGARLETLAAFKEGTLRV
LVATDVAARGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGVAISLMCPEESKQHE
AIEKLTKQTLAPQNVDGFWPSWLPRPKPAQREQPMREPSAPALSGKGEGLKQPRAGRRSR
KGKREVPALLLPPRYKVEMIR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttcggaactgggcctgtcgcctgagatcctgcgcgcgatcgaggagcagggc
tacagccagccgacgccgatccaggaaaaggctattccgctggtgttgtccggccgcgac
ctcttggccgccgcgcaaaccggcaccggcaagaccgccgccttcatgctgccgattctg
gagcgcttgaagaaattcgccaataccagcgtatcgccggccatgcacccgatccgcgcc
ctggtgctgtcgccgacgcgcgaattggccgaccagatcggcgtcaatgtgcagacctat
accaagtatctgccgctgcgcgccaccaccgtcttcggcggcgtcaacatggatccgcag
actcaggagctgcgtcgcggcgtggaaatcctgatcgctacgccgggccggctgctggat
cacatccagcagaagaccgtgcagctgaacaaggtggaagtgctggtgctggacgaaggc
gaccgcatgctggacatgggcttcatccaggatatccgcaagatcatgggcatgctgccc
aaggagcgccagaccctgctgttctcagccaccttcgcgccggagatcaagcgcctggcg
gccgatttcatgcgctctccgcaaacggtggaagtcgcccgccagaacgccaccaatgac
caggtggagcagctggtgtaccaggtggacagcttcaagaagcgccaactgctggcccat
ttgatccgctcgcgcgagatgagccaggtcatcgtgttctgcaagaccaagatcagcgcc
gaccaactgtcgcgcgatttgaaacgcgacgggctgaacgccgaggcgattcacggcgac
aagacccagggcgcgcgtttggagacgctggccgcgttcaaggaaggcacgctgcgcgtg
ctggtggccaccgacgtggccgcgcgcggcctggatatttccgagctgccctatgtggtg
aacttcgagctgccgacctcgccggaggactatgtgcaccgcattggccgcaccggccgc
gccggggccaagggcgtggcgatctcgctgatgtgtcccgaggagtccaagcagcatgag
gccatcgaaaagctgaccaagcagacgttggcgccgcagaatgtggacggcttctggccg
tcctggctgccgcggcctaagccggcgcagcgcgagcagcccatgcgcgagccgtccgcg
ccggccttgtcgggcaagggcgaggggctgaagcagccgcgcgccggtcgccgcagccgc
aagggcaagcgcgaggttccggccttgctgctgccgccgcgctataaagtcgagatgata
cgttga
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