Chromobacterium paludis: FYK34_02770
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Entry
FYK34_02770 CDS
T06224
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
chrm
Chromobacterium paludis
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_02770 (hrpA)
Enzymes [BR:
chrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FYK34_02770 (hrpA)
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FYK34_02770 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
AAA_30
T2SSE
ABC_tran
AAA_25
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QEL54568
UniProt:
A0A5C1DG65
LinkDB
All DBs
Position
complement(605332..609267)
Genome browser
AA seq
1311 aa
AA seq
DB search
MTPAARLADLKSALSSCLIRDRHLLRRKLADAADRLKKNQPADKLLADIAGQVERSRSRA
DARRAHLPKPSFDDALPVNQKLADIKTAIDKHQVVIICGETGSGKTTQLPKICLELGRGV
FGLIGHTQPRRLAARSVATRIAQELGSQLGEHVGFKVRFTDKLSEKSVIKLMTDGIMLAE
TQTDRHLEAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFSRHF
DGAPVIEVSGRTYPVEVRYRPLKQRDEDEREMEMEDAIVDAADELSRQGPGDMLVFLPGE
REIRETAEKLRKSGIRGYEILPLFARLSNEDQQKIFKPSGGRRIVLATNVAETSLTVPGI
KYVIDTGLARINRYSPRAKVEQLQVEKVSQAAARQRAGRCGRVESGICVRLYAEDDFNAR
PAFTDPEIVRSNLAAVILRMAALRLGKVDAFPFLEAPSSRLIADGYQVLTELGAVNEQGE
LTPVGKELARIPVDPKVGRLLLAGRDYHCAREVLIIAAALSIQDPRERPFEARDAAEKAQ
ARFNDEKSDFLSFLHLWDFFADALKHKKSNRQLVNACHDHFLSYMRMREWRELHAQLAEI
ASELGLITRDQAHADAEQPDAQMTQKKRQQVDAVAYENLHKALVTGLIGNIGMKNQEGDD
YQGARGVNFHVFPGSGLKKAKPKWLVAAELVETTRLYARCVAKIEPEWVEKLAPHLVKYH
YFEPHWEKSRGEVVASERVTLYGLTLIPRRAVSYGRIAPEEARELFIRGALVNMEYVSNA
PFFQRNQQLIREVEQLEHKARRQDVLVDEEALYAFYSERIPAEVVDAASFEAWRKEAEKT
EPKLLHLTREELMRHAAQHVTENQFPEWLELEDGKLKLRYRFEPKHPLDGVTIDVPLAIL
NRLTPAPFEWLVPGMIRDKLQQLIKGLPKQIRRCCVPVPDFITRFLLTVPDLQQPIAPQL
ARFILRETGGVKVDIDAFNTQELPEHMLFNFRVIDDGKQEIGMGRDLAALQKQFGQAAQL
TFRDTSAEFERDDVKAWDFGELPESIQFARGRQQLTGYPALTLEEDRVAIRLFDTQAVAE
KHHRQGVIRLLQLQLKEQMKQLGKGLPGMTQIALQLRAVANADDLLADAIAAICDRAFIG
EDALPRNEKAFNEQKTRARTRLPAVIQAVAQYLQQIAAEYTPLVTKMQKHKLGHELKGQL
ERLVYKGFLSDTPWSHLPQLPRYMKAMSLRMDKQPANPQRDGQRAAEIRDLWQQWEQRVA
AQKEQGEPAPAVLDFRWMLEELRVSLFAQELKTPYPVSVKRLLKVWSELPR
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgccgcccgcctcgccgacctgaaatccgccctgtcctcctgcctgatccgc
gaccgccacctcctgcgccgcaaactggccgacgccgccgaccggctgaagaagaaccag
ccggccgacaagctcttggcggacatcgccggccaggtggaacgctcgcgcagccgcgcc
gacgcgcgccgcgcgcatctgcccaagcccagcttcgacgacgcgctgccggtcaaccag
aagctggccgacatcaagacggcgatagacaagcaccaggtggtgatcatctgcggcgag
accggctccggcaaaaccacccagcttcccaagatctgcctggagctgggccgcggcgta
ttcggcctgatcggccacacccagccgcgccggctggccgcgcgctcggtggcgacgcgc
atcgcgcaggagctgggttcgcaattgggcgagcatgtcggcttcaaagtgcgctttacc
gataaattgtcggaaaaatcggtgatcaagctgatgacggacggcatcatgctggcggaa
acgcagaccgaccgccacctagaagcgtacgacaccatcatcatcgacgaggcgcacgag
cgcagcctgaacatcgacttcctgctcggttacctgaagcagttgctgccgcgccggccg
gacctgaaagtcatcatcacctccgccaccatcgacgccgaccgcttctccaggcacttc
gacggcgcgccggtgatcgaggtgtccggccgcacctacccggtggaagtgcgttaccgg
ccgctgaagcagcgcgacgaagacgagcgcgagatggagatggaagacgccatcgtcgac
gcggccgacgagttgtcgcgccagggccctggcgacatgctggtcttcctgcccggcgag
cgcgaaatccgcgaaaccgcggagaagctgcgcaagtccggcatccgcggctacgagatc
ctgccgctgttcgcgcgcttgtccaacgaggaccagcagaaaatcttcaaaccgtccggc
ggccgccgcatcgtgctggccaccaatgtggcggaaacctcgctgacggtgcccggcatc
aaatacgtgatcgacaccggcctggcccgcatcaaccgctacagcccgcgcgccaaagtg
gagcaattgcaggtggagaaggtgtcgcaggcggccgcccgccagcgcgccggccgttgc
ggccgcgtcgagtccggcatctgcgtgcgcctatacgccgaggacgacttcaacgcgcgc
ccggccttcaccgatccggaaatcgtccgctccaacctggcggcggtgatcctgcgcatg
gccgcgctgcgcctgggcaaggtggacgccttccccttcctggaagcaccgtccagccgt
ctgatcgccgacggctaccaggtgctgaccgagctgggcgcggtgaacgagcagggcgag
ctgaccccggtcggcaaggaactggcgcgcatcccggtggacccgaaagtgggccgcctg
ctgctggccggccgcgactaccactgcgcgcgcgaagtgctgatcatcgcggcggccttg
agcatacaagacccgcgcgagcggccgttcgaggcgcgcgacgcagcggaaaaggcccag
gcccgtttcaacgacgagaagtcggacttcctgtccttcctgcatctgtgggacttcttc
gccgacgcgctgaagcacaagaaatccaaccgccagctggtcaacgcctgccacgaccac
ttcctgtcctatatgcgcatgcgcgagtggcgcgagctgcacgcgcaactggccgaaatc
gccagcgaactgggcctgatcacccgcgaccaagcccatgccgacgccgagcagccggac
gcgcagatgacgcagaaaaagcgccagcaagtggacgcggtggcctatgaaaacctgcac
aaagcgctggtgaccggcctgatcggcaatatcggcatgaagaaccaggaaggagacgac
taccaaggcgcgcgcggcgtcaacttccacgtctttcctggctccggcttgaagaaagcc
aagccgaaatggctggtggcggccgagctggtggaaaccacccgcctctacgcgcgctgc
gtggccaagatcgagccggagtgggtggagaagctggcgccgcacctggtgaagtaccac
tacttcgagccgcactgggaaaagagccgcggcgaagtcgtcgccagcgaacgcgtcacg
ctgtacggcctgacgctgatcccgcgccgcgccgtcagctacggccgcatcgcgccggaa
gaggcgcgcgagctgttcatccgcggcgcgctggtgaatatggaatacgtcagcaacgcg
cccttcttccaacgcaaccagcaactgatccgcgaggtggagcagctggagcacaaggcg
cgccgccaggacgtgctggtggacgaagaggcgctgtacgccttctatagcgaacgcatc
ccggcggaagtggtggacgccgccagcttcgaagcctggcgcaaggaggcggaaaaaacc
gaacccaagctgctgcacctgacccgcgaagagctgatgcgccacgccgcccagcatgtg
accgaaaaccagttcccggaatggctggagctggaggacggcaagctgaagctgcgctac
cgctttgaacccaaacacccgctggacggcgtcaccatcgacgtgccgctggccatcctg
aaccgcctgacgccggccccgttcgaatggctggtgccgggcatgatccgcgacaagctg
cagcagctgatcaagggcctgcccaagcaaatccgccgctgctgcgtgccggtgccggac
ttcatcacccgcttcctgctgaccgtcccggacctgcagcagcccatcgcgccgcaactg
gcgcgcttcatcctgcgcgagaccggcggcgtgaaggtggacatcgacgcgttcaacacg
caggaattgccggaacacatgctgttcaacttccgcgtgatagacgacggcaagcaggaa
atcggcatgggccgcgatctggccgcgctgcagaagcagttcggccaggcggcgcagctg
accttccgcgacaccagcgccgaattcgagcgcgacgacgtcaaggcctgggacttcggc
gagctgccggaaagcatacagttcgcccgcggccgccagcagctcaccggctatccggcg
ctgacgctggaggaagaccgcgtcgccatccgcctgttcgacacccaggccgtggcggaa
aagcatcaccgccagggcgtgatccgcttgctgcaattacaactgaaagaacagatgaag
cagctgggcaagggcctgcccggcatgacgcaaatcgcgctgcagctgcgcgcggtggcc
aatgccgacgacctgctggccgatgccatcgccgccatctgcgaccgcgccttcatcggc
gaggacgcgctgccgcgcaacgaaaaagccttcaacgagcagaaaacccgcgcccgcacc
cgcctgccggcggtgatccaggccgtggcgcagtacctgcagcaaatcgccgccgaatac
acgccgctggtcaccaagatgcagaagcacaagctggggcatgagctgaagggccagctg
gagcggctggtatacaagggttttctcagcgacacgccctggagccacctgccgcaattg
ccgcgctacatgaaggcgatgagcctgcgcatggacaaacagccggccaatccgcagcgc
gacggccagcgcgccgccgaaatccgcgatttgtggcagcaatgggagcaacgcgtggcg
gcgcaaaaagaacaaggcgaaccggcgccggcggtgctggatttccgctggatgctggag
gaactgcgcgtcagcctgtttgcccaggaattaaaaacaccttacccagtctctgttaag
cgcctattgaaagtatggagcgaactgccgcgttga
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