Chromobacterium paludis: FYK34_03045
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Entry
FYK34_03045 CDS
T06224
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chrm
Chromobacterium paludis
Pathway
chrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYK34_03045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrm03021
]
FYK34_03045
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_03045
Transcription machinery [BR:
chrm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FYK34_03045
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FYK34_03045
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
S1CSD-TOTE-2
NACHT
Fungal_virus_P2_C
AAA
AAA_22
AAA_5
Motif
Other DBs
NCBI-ProteinID:
QEL54611
UniProt:
A0A5C1DD15
LinkDB
All DBs
Position
674652..675908
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AA seq
418 aa
AA seq
DB search
MHLSDLKHLHVSELVEMAISNEIEGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN
GEAPENSKHKILFENLTPLFPTEQFKLERDIRAEENITGRIIDLISPIGRGQRALLVAPP
KSGKTVMLQHIAHAITANHPDATLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNCEIHLDRKMAEKRIFPALNI
NRSGTRREELLVPQDQLQRIWVLRKLLYPMDDLEAMEFLQDKIKATKSNQAFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacttatctgacctcaaacatcttcatgtttccgaactcgtggaaatggcgatttcc
aacgagatcgaaggcgccaaccggctgcgcaagcaggatctgatcttcgcgcttctgaaa
aaccaggccaaaaaaggcgagagcatcttcggcgagggcacgctggaagtgctgccggac
ggcttcggctttctgcgcagcccggatacctcgtatctggccggcccggacgacatctac
gtcagcccctcgcagatccgccgcttcaacctgcataccggcgattcgatcgagggcgag
atccgcacgcctaaggacggcgagcgctattttgcgctggtgaaggtggacaaggtcaac
ggcgaggcgccggagaattccaagcacaagattctgtttgagaacctgacgccgctgttc
ccgaccgagcagttcaagctggagcgcgacatccgcgccgaagagaacatcaccggccgc
atcatcgacctgatctcgccgatcggtcgcggccagcgcgctctgctggtggcgccgccg
aagtcgggcaagaccgtgatgctgcagcatatcgcgcacgccatcaccgccaaccatccc
gatgcgacgctgattgtgctcttgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgctcggtgcgcggcgaagtggtgtcgtccaccttcgacgagccggccacccgccacgtg
caggtcgccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtgatcctgctggactccatcacccgtctggcccgcgcctacaacaccgtggtgccggca
tccggcaaggtgctgaccggcggcgtggacgccaacgcgctgcaacgcccgaagcgcttc
ttcggcgccgcgcgcaatgtggaagagggcggcagcctgaccatcatcgccaccgcgctg
attgataccggcagccgcatggatgacgtgatctacgaggaattcaagggcaccggcaat
tgcgaaatccatctggaccgcaaaatggcggaaaagcgcattttcccggcgctgaacatc
aaccgctccggcacgcgccgcgaagagctcttggtgccgcaggaccagctgcagcgcatc
tgggtgctgcgcaagctgctgtatccgatggatgatctggaggcgatggagttcctgcag
gacaagatcaaggcgaccaagtcgaatcaggctttcttcgactcgatgcgccgctaa
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