Chromobacterium paludis: FYK34_04250
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Entry
FYK34_04250 CDS
T06224
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYK34_04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_04250
03009 Ribosome biogenesis [BR:
chrm03009
]
FYK34_04250
Enzymes [BR:
chrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FYK34_04250
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FYK34_04250
Ribosome biogenesis [BR:
chrm03009
]
Prokaryotic type
rRNA processing factors
FYK34_04250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QEL54833
UniProt:
A0A5C1DEB8
LinkDB
All DBs
Position
930484..933375
Genome browser
AA seq
963 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQGYEGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVPHGMSLIARTAGIGRNLEELQW
DMGYLMQLWRAIEGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIHDQARQ
FMSHVMPNMLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSVD
VNSARATKGADIEETAVRTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQRDVENRL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHY
KIVRVRHDDMAELGEAPSYSRVEVQEEDVITNFGQEKPKAVRLEAAVKGITPQQPAPTAA
PAAPVKAAEPAGLFAGIAAWFKGLFAEPEKAAEPEKKKPVAAASRNEQRGNRQRQQERRT
GGQARREHEQRRQATPDEGKPRHERKDAERKDERQERKDTAQREERNEQPRERGNRRRER
EGREPREAKEVREQAPREERVNVEKQDKPQQEPRRRQAPVAAPLEADKPLVPDEVRVEAA
DGVEGDLAEQQERSERRRRRSRRDRRRDNPEVQAEGAVADAGAEGQAVEAAGIAAAAAVT
VAAVEAVAETVQGQPQAEPVVEAKPVEVVAAIEPVVEVQAEAAVEAAVAEAAPQAEAPVV
EEAKAEAVDVEPVVVAAPVVTEAAPAEAVEAEPVPAVVEAVAEAPAVEAPAVVAAVAAPV
VEEAKPMDLGGLVMVSTKPAAEQAPAVVEPVVPQGPRRRDVVSQGAAEPEAPVQLMQVET
RQG
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgcgacgcaggccgaagagctgcgcgtcgccattgtcgac
gggcaaaagctcgtcgatctcgatatcgagaccgtaggcaaggaacagcgcaagggcaat
atctacaagggtgtgatcacccggatcgagccttcgctggaagcctgctttgtcgattac
ggtaccgaacgccacggcttcctgccgttcaaggaagtttcccgctcctatttccaaggc
tatgaaggcggccgtccgcgcattcaagacgtcctgcgcgaaggcatggaagtggtggtg
caggtggagaaggacgagcgcggcaacaagggcgcggcgctgaccacctacatcagcctg
gccggccgttacctggtgctgatgcccaacaacccgcgcggcggcggcgtatcgcgccgc
atcgagggcgaagagcgccaggagctgaaggatctgctgtcgcagctggaagtgccgcac
ggcatgagcctgattgcgcgcaccgccggcatcggccgcaatctggaagagctgcagtgg
gacatgggttacctgatgcagctgtggcgcgccatcgaaggcgctgccggcgcccagtcc
gcgccgttcctgattctgcaggaaggcagcctggtgatccgcgcgattcgcgactatttc
catccggacatcggcgaagtgctgatcgacaccgaggaaatccacgaccaggcccgccag
ttcatgagccatgtcatgcctaacatgctgtcgcgtgtgaagctgtacaaggaccatgtg
ccgctgttctcccgcttccagatcgaacaccagatcgaaaccgccttctcgcgcagcgtg
cagctgccgtccggcggcgccatcgtgatcgaccacaccgaggcgctggtgtcggtggac
gtcaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgcggtccgcaccaat
ctggaagcggctgaagagatcgcccgccagctgcgcctgcgcgacctgggcggtctggtg
gtgatcgacttcatcgacatggaaaacccgaagaaccagcgcgacgtggaaaaccgcctt
cgcgatgttctgaagcatgaccgcgcccgcgtgcaaatgggcaagctgtcccgcttcggc
ctgctggagctgtcccgtcagcgcctgcagccgtccctgggcgagaccagccacgagccg
tgcccgcgttgccatggcatcggcttcatccgcggcaccgaatcgtccgccttgcacatc
ctgcgcatcatccaggaagaggcgatgaaggaaaacaccggcgcggtgcacgcgcaggtg
ccggtcgatgtggccactttcctgttgaacgagaagcgcgccgaaatccactccatcgag
gaacgcctcgacgtggacgtggtgctgatcccgaacatccacctggaaaccccgcactac
aagatcgtgcgcgtgcgccatgacgacatggccgagctgggcgaagcgccgagctacagc
cgcgtggaagtgcaggaagaggacgtgatcaccaacttcggccaggaaaagccgaaggcc
gtgcgtctggaagccgccgtcaagggcatcacgccgcaacagccggcgccgactgccgcc
cctgccgcgccggtcaaggctgccgagccggcgggcttgttcgccggcatcgccgcctgg
ttcaagggcctgttcgccgagccggaaaaggcggccgagccggagaagaaaaagccggtg
gccgcagcttcgcgcaacgagcagcgcgggaatcgccagcgtcagcaggagcgccgcacc
ggcggccaggcccgccgcgagcacgagcagcgccgccaggccacgccggacgagggcaag
ccgcgccacgagcgcaaggacgccgagcgcaaggatgagcgtcaggagcgcaaggacacg
gctcagcgcgaggagcgcaacgagcagccgcgcgagcgcggcaaccgccgccgcgagcgc
gaaggccgcgagccgcgcgaagccaaggaagtccgcgagcaggcgccgcgcgaagagcgt
gtgaacgtcgagaagcaggacaagccgcagcaggagccgcgtcgccgccaggcgccggtt
gccgcgccgcttgaagccgacaagccgctggtgccggatgaggttcgcgttgaggcagcg
gacggcgtggagggcgatctggccgagcagcaggagcgcagcgaacgccgccgccgccgc
agccgccgcgatcgtcgccgcgacaatccggaagtccaggcggaaggcgcagttgccgac
gcgggcgccgaaggtcaagccgttgaagctgccggcatcgctgccgccgctgccgtgacg
gtcgccgccgtcgaggccgtggccgaaacggtgcaaggccagccgcaagccgagccggta
gtggaggccaagccggttgaggtcgtagccgctattgagccggtggtcgaagttcaggct
gaagccgcggttgaggcagctgtggccgaggcggccccgcaggcggaagcgccggtggtg
gaggaagccaaggccgaggccgttgatgtggagccggttgtcgtggccgcgcctgtggtc
accgaagcggctccggctgaagcggttgaagctgagcctgttccggctgttgtggaagcc
gtggcggaagcgcctgcggtcgaagcgcctgccgttgtggcggcggttgccgcgccggtg
gtggaagaggccaagccgatggacctgggcggtctggtgatggtgtcgaccaagccggct
gccgagcaggcgcctgccgtggtcgagccggtcgtgccgcaaggcccgcgtcgccgcgat
gtcgtgtcgcaaggcgcggccgagccggaagcgccggtgcagctgatgcaggtggaaacc
cgccagggttga
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