KEGG   Chromobacterium paludis: FYK34_08360
Entry
FYK34_08360       CDS       T06224                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
chrm  Chromobacterium paludis
Pathway
chrm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:chrm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FYK34_08360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:chrm03019]
    FYK34_08360
Enzymes [BR:chrm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FYK34_08360
Messenger RNA biogenesis [BR:chrm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FYK34_08360
SSDB
Motif
Pfam: DEAD Helicase_C AAA_22 ResIII CMS1
Other DBs
NCBI-ProteinID: QEL57846
UniProt: A0A5C1DM70
LinkDB
Position
1834684..1835940
AA seq 418 aa
MGLPPDLAQSALAQGYLQPTAIQQAAIPAILQGRDVLATAQTGSGKTAAFCLPLLRQWLD
SPRAILRQPQALVLLPTRELAVQVGDILRELSLGLPRKLKTAVVYGGVSINPQMMALRGG
ADILVATPGRLLDLLERNALRLSAIRTLVLDEADRLLDPGFADELNAVLDRLPPSRQNLL
FSATFPPAVRALAAKLQQQALRIEIEPGAASAPDIRQRAIEVDADRRTMLLHHLLQTHGW
ERALVFVASRHAADRVADKLQRKGMPAAALHGDCSQSQRGQALADLKSGRLRVLVATDVA
ARGIDIARLPLVVNYDLPRSTADYTHRIGRTGRAGARGEAISFVCADSAAHFRLIEKRQG
LSLPRERIASFEPSAAAAPPPSATDPDGNGGIKGKRKSKKDKLREAARLAADGGARPD
NT seq 1257 nt   +upstreamnt  +downstreamnt
ctgggcctgccgcccgacctggcccagtccgccctggcgcaaggctatctgcagcccacc
gccatccagcaagccgccatccccgccattctgcaaggcagagacgtgttagccaccgcg
caaaccggctccggcaagaccgcggccttctgcctgccgctgctgcggcagtggttggac
agcccgcgcgccatcctgcgccagccgcaggccctggtcctgctgcctacgcgcgaactg
gcggttcaggtgggcgacatcctgcgcgagctgtccctgggactgccgcgcaagctgaaa
acggccgtagtctacggcggcgtgtccatcaatccgcaaatgatggcgctgcgaggcggg
gccgacatcttggtggcgacgcccggccgcttgctggacctgctggagcgcaacgcgctg
cggctctccgccatccgcaccctggtgctggacgaggcggaccgcctgttggatccaggc
ttcgccgacgagctgaacgcggtgctggaccgcctgccgccgtcgcggcagaacctgctg
ttctcggccaccttcccgccggcggtccgcgcgctggcggcaaagctgcagcagcaagcg
ctgcggattgagatcgagccaggcgccgccagcgcgccggacatccgccagcgcgccatc
gaggtggacgccgatcggcgcaccatgctgctgcaccatctgctgcagacacatggctgg
gagcgagcgctggttttcgtcgccagccgccatgccgccgaccgggtggcggacaagctg
cagcgcaagggcatgcccgccgccgcgctgcacggcgactgcagccagagccagcgcggc
caggcgctggccgatctcaagtccggccgcttgcgggtgctggtggcgaccgacgtggcg
gcgcgcggcatcgacatcgcccggctgccgctggtggtgaactacgacctgccgcgttcg
accgccgactacacccaccgcatcggccgcaccgggcgcgccggcgcccgcggcgaagcc
atcagcttcgtctgcgccgacagcgccgcccacttccggctgatcgaaaagcgccaaggc
ctgagcctgccgcgcgagcgcatcgccagcttcgagccaagcgcggcggccgcgccgccg
ccctccgcgaccgacccagacggcaacggcggcatcaagggcaaacgcaagagcaagaaa
gacaagctgcgcgaagccgcaaggctggcggccgacggcggcgcgcgcccagactag

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