Chromobacterium paludis: FYK34_08360
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Entry
FYK34_08360 CDS
T06224
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYK34_08360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_08360
Enzymes [BR:
chrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FYK34_08360
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FYK34_08360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEL57846
UniProt:
A0A5C1DM70
LinkDB
All DBs
Position
1834684..1835940
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AA seq
418 aa
AA seq
DB search
MGLPPDLAQSALAQGYLQPTAIQQAAIPAILQGRDVLATAQTGSGKTAAFCLPLLRQWLD
SPRAILRQPQALVLLPTRELAVQVGDILRELSLGLPRKLKTAVVYGGVSINPQMMALRGG
ADILVATPGRLLDLLERNALRLSAIRTLVLDEADRLLDPGFADELNAVLDRLPPSRQNLL
FSATFPPAVRALAAKLQQQALRIEIEPGAASAPDIRQRAIEVDADRRTMLLHHLLQTHGW
ERALVFVASRHAADRVADKLQRKGMPAAALHGDCSQSQRGQALADLKSGRLRVLVATDVA
ARGIDIARLPLVVNYDLPRSTADYTHRIGRTGRAGARGEAISFVCADSAAHFRLIEKRQG
LSLPRERIASFEPSAAAAPPPSATDPDGNGGIKGKRKSKKDKLREAARLAADGGARPD
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
ctgggcctgccgcccgacctggcccagtccgccctggcgcaaggctatctgcagcccacc
gccatccagcaagccgccatccccgccattctgcaaggcagagacgtgttagccaccgcg
caaaccggctccggcaagaccgcggccttctgcctgccgctgctgcggcagtggttggac
agcccgcgcgccatcctgcgccagccgcaggccctggtcctgctgcctacgcgcgaactg
gcggttcaggtgggcgacatcctgcgcgagctgtccctgggactgccgcgcaagctgaaa
acggccgtagtctacggcggcgtgtccatcaatccgcaaatgatggcgctgcgaggcggg
gccgacatcttggtggcgacgcccggccgcttgctggacctgctggagcgcaacgcgctg
cggctctccgccatccgcaccctggtgctggacgaggcggaccgcctgttggatccaggc
ttcgccgacgagctgaacgcggtgctggaccgcctgccgccgtcgcggcagaacctgctg
ttctcggccaccttcccgccggcggtccgcgcgctggcggcaaagctgcagcagcaagcg
ctgcggattgagatcgagccaggcgccgccagcgcgccggacatccgccagcgcgccatc
gaggtggacgccgatcggcgcaccatgctgctgcaccatctgctgcagacacatggctgg
gagcgagcgctggttttcgtcgccagccgccatgccgccgaccgggtggcggacaagctg
cagcgcaagggcatgcccgccgccgcgctgcacggcgactgcagccagagccagcgcggc
caggcgctggccgatctcaagtccggccgcttgcgggtgctggtggcgaccgacgtggcg
gcgcgcggcatcgacatcgcccggctgccgctggtggtgaactacgacctgccgcgttcg
accgccgactacacccaccgcatcggccgcaccgggcgcgccggcgcccgcggcgaagcc
atcagcttcgtctgcgccgacagcgccgcccacttccggctgatcgaaaagcgccaaggc
ctgagcctgccgcgcgagcgcatcgccagcttcgagccaagcgcggcggccgcgccgccg
ccctccgcgaccgacccagacggcaacggcggcatcaagggcaaacgcaagagcaagaaa
gacaagctgcgcgaagccgcaaggctggcggccgacggcggcgcgcgcccagactag
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