Chromobacterium paludis: FYK34_12055
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Entry
FYK34_12055 CDS
T06224
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYK34_12055 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_12055 (rnr)
03016 Transfer RNA biogenesis [BR:
chrm03016
]
FYK34_12055 (rnr)
Enzymes [BR:
chrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FYK34_12055 (rnr)
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FYK34_12055 (rnr)
Transfer RNA biogenesis [BR:
chrm03016
]
Prokaryotic type
tRNA degradation factors
FYK34_12055 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
DUF7372
Motif
Other DBs
NCBI-ProteinID:
QEL56241
UniProt:
A0A5C1DHQ6
LinkDB
All DBs
Position
complement(2587088..2589916)
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AA seq
942 aa
AA seq
DB search
MAQTSKRQKKLSLREQDPFLEREKLKYPQPLPSREFIMQILAEQGVPLFPDELALMLSIH
RDERAYFERRLRAMERDGEVIINRKGAVCVAQKLDLVRCKVSGHRDGFGFAIPDEGEGRG
ADIFLPEREMKKVMHGDRVMVRPSGVDRRGRQEGKIVEVLEHAVSRLVGRIQHERGVWVV
RPEDRRISHDILIEPGGEAGAQDGQVVMVDILQQPDAHHQPMGKVAEVLGNYADPGMEIE
IALRKHDLPHVFADDVLAQAKATPKKVRKKDWSKDRVDLRELPLVTIDGETARDFDDAVY
AERQGKGYRLVVAIADVSFYVQPGDALDQEALKRGTSVYFPRRVIPMLPEALSNGICSLN
PDVERMCMVCDMQINAKGEVKKYKFYPAVMQSKARLTYNQVWDWLQNGTDHAMLPHVQDL
YALFKILLSARGKRGAIEFDSTETQMIFNDQGKIERIVPIVRNDAHRLIEECMLAANVCS
ADFLQKNGHKALYRVHEGPTEEKLENLRGFLGLVGLTLGGGDKPSAKDYGKLAEQIHGRP
DAPVLQTMLLRSMQQAVYTPDNHGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLKGEK
YKPGKWAALGVHCSMTERRADDASRDVESWLKTYYMRDKIGEVFHGKISAVTSFGVFVLL
DEVYVEGLVHISELGKDYFHFKKELQAIIGEKSGLQYRLGDALTVKVMAANLESSQVDFA
LVKDELPAPTSAAEDAAGPAGKPRRRRRGKAAGAGETFVAPPETVAAPAAMAEIASKPAG
LPPAPKGRSGPAKQTAETKPAVPPAVTTAASIKTEPAPAAAAPAAASDAPPASAKARGRA
AKPAVEQKPIGKPQAAAAKPEVKSAKAEAPAGAKGRRRSAAAGQAKVDSPGAQPPDVAQP
AARQQSANPQAVGAQAEPRAPAQPSARRRGGRSQAKRRSGEE
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacctcaaaaaggcaaaaaaaactttctctgcgtgagcaggatccatttttg
gaacgcgagaagctcaaatacccccaacccttgcccagccgcgagttcatcatgcagata
ctcgccgagcaaggggtgccgctgtttccggatgaattggcgttgatgttgtccattcac
cgcgatgagcgcgcttatttcgaacgccgtctgcgcgcgatggagcgcgatggcgaagtc
atcatcaatcgcaagggcgcggtgtgcgtagcgcagaaactggatttggtccgctgcaag
gtatcgggccaccgcgacggtttcggcttcgccattccggatgaaggagaaggccgcggc
gccgacattttcctgcccgagcgcgaaatgaagaaagtgatgcacggcgaccgcgtgatg
gtgcggccttctggcgtcgaccgccgcggccggcaggaaggcaagatcgtcgaggtgctg
gagcatgcggtgagcaggctggtcggccgcattcagcatgagcgaggcgtatgggtggtg
cggccggaagaccgccgcatcagtcatgacattctgatcgagccgggcggcgaagccggg
gcgcaagacggccaggtggtgatggtggacattctgcagcagccggacgcgcatcatcaa
ccgatgggcaaggtggccgaggtgttgggcaattacgccgaccctggcatggaaatcgaa
atcgcgctgcgcaagcatgacctgccgcacgtttttgccgatgatgtcctggcgcaggct
aaggctacgccgaaaaaggtccgcaagaaggactggagcaaggaccgggtggatctgcgc
gagctgccgctggtcacgatagacggcgaaaccgcgcgcgacttcgacgacgcggtgtat
gcggagaggcagggcaagggctatcgtctggtggtggccatcgccgacgtcagcttctat
gtccagcccggcgacgctctggatcaggaagcgctgaagcgaggcacttcggtctatttt
ccgcgccgggtgatcccgatgctgccggaggcgctgtccaatggcatctgttccctgaat
ccggacgtcgagcgcatgtgcatggtgtgcgacatgcagatcaatgccaagggcgaggtc
aagaaatacaagttctacccggcggtgatgcagtccaaggctcgcctcacctacaaccaa
gtctgggactggctgcagaacggcaccgatcatgccatgctgccgcatgtgcaggatttg
tatgccttgttcaagatcctgctatcggcgcgaggcaagcgcggcgccattgagtttgac
tccacggaaacgcagatgatcttcaatgatcagggcaagatcgagcgcatcgtgcccatc
gtgcgcaatgacgcgcatcggctgatcgaggagtgcatgctggcggccaatgtctgctcg
gcggacttcctgcagaagaacggccacaaggcgctgtatcgcgtgcatgaaggccccacc
gaggagaaactggaaaacctgcgcggctttctgggcctggtcggcctgacgctgggcggc
ggcgacaagccgagcgccaaggattacggcaagctggcggagcaaattcacggtcggcct
gatgcgccggtgctgcagaccatgctgttgcgctccatgcagcaggcggtctacaccccg
gacaaccatggccacttcggcctggcttatgaggcctatacccactttacctcgcccatt
cgccgctatccggacctgctggtccatcgcgcgatcaaggcggtgttgaagggcgagaag
tacaagccaggcaagtgggcggctttgggcgtgcattgctcgatgacggagcgtcgagcg
gatgatgccagccgcgatgtcgaatcctggctgaaaacctactatatgcgcgacaagatt
ggtgaagtcttccatggcaagatcagcgccgtcaccagctttggcgttttcgtattgctg
gacgaggtctatgtagaaggcttggtgcacatctccgaactgggcaaggactacttccac
ttcaagaaggagttgcaggcgatcatcggcgagaagagcggtcttcaataccgcttgggt
gatgcgctgaccgtcaaggtgatggctgccaatctggaaagctcgcaagtggacttcgct
ctggtcaaggacgaattgcctgctccgacctccgcggctgaagatgcggcagggccggcc
ggcaaaccgagacgtcgccggcggggcaaggctgccggcgcgggcgagacctttgtggcg
ccgcctgagacggttgccgcacctgctgccatggctgagatagcatccaaacctgcaggc
ttgccgcctgcgccaaagggtcgcagcggtcccgccaagcagacggctgagaccaagccg
gccgttccgcccgcagtgacaacagccgcttccatcaagactgagccggctccagcggct
gctgccccagcggccgcaagcgatgccccaccggccagcgccaaggcgcgaggtcgtgcg
gccaaacctgcggtcgagcaaaagcccataggtaagccgcaggcagcggctgccaagccc
gaggttaagtcggccaaggcggaggcgccggcgggagctaaggggcggcgtcgttctgca
gccgcaggccaggcaaaggtggattctcctggtgcgcagccgccagatgtagcgcagccg
gcggctcgccagcaaagcgccaatcctcaggctgtaggggcgcaagctgagccacgggcg
ccagcgcagccttcggcacgcaggcgcggtggcagaagccaagccaagcgccgctccggc
gaggagtga
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