Chromobacterium paludis: FYK34_16740
Help
Entry
FYK34_16740 CDS
T06224
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FYK34_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrm03019
]
FYK34_16740
Enzymes [BR:
chrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FYK34_16740
Messenger RNA biogenesis [BR:
chrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FYK34_16740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
HI1480
UvrD-helicase
P-loop_SecA
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEL57085
UniProt:
A0A5C1DK61
LinkDB
All DBs
Position
complement(3542005..3543441)
Genome browser
AA seq
478 aa
AA seq
DB search
MSDLTFADLGLAEPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTL
PLLQLLMRAPSHHAGRPRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQI
KALRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKLPA
QRQNLLFSATFSDEIKALADKLLDNPKLVEVARRNTTNELVTQKVHLVDRDKKTELLIHL
IREHNWFQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVL
VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRD
IEKLIKMSIERFTVPGFEADLNVKPEPIPMGGGARGRGQGAPRAQGQGRGQGQNRGQGQG
QPRNAPAKPRHQTESKPAGHGRNGGPRQGQGQGARTEGSRSAKPAAPKSALFSPPKNR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcttacctttgctgacctaggcctggccgaaccgttattgcgggccgtggcc
gacaccggttataccacgccgacgccgattcaggctcaggcgattccccaggtgctgcaa
ggcggcgacctgctggccgcggcccagaccggcaccggcaagaccgccggcttcaccctg
ccgctgctgcagctgttgatgcgcgcgcccagccatcacgccggccgcccgcgcgcgctg
gtgctgacgccgacgcgcgagctggcggcccaggtggaagagtcggtgcgcacctacagc
aaatatctgcccttgaagtcgctggtgatgttcggcggcgtcaacatcaatccgcagatc
aaggcgctgcgcgcgccggtggacatcctggtggcgacgccgggccgcctgctggaccac
gtcggccagaagaccgtcgacctgtccggcgtcgagatcctggtgctggacgaagccgac
cgcatgctggacatgggcttcatccacgacatcaagaaagtgctggccaagctgccggcc
cagcggcagaacctgctgttctcggccaccttctccgacgagatcaaggcgctggccgac
aagctgctggacaaccccaagctggtggaagtggcgcgccgcaacaccaccaacgagctg
gtgacgcagaaggtacacctggtcgaccgcgacaagaagaccgagctgttgatccatctc
atccgcgagcacaattggttccaggtgctggtgttcacccgcaccaagcacggcgccaac
cggctggccgaaaagctggacaagatcggcatcccggccgccgccatccatggcaacaag
agccagaacgcgcgtacccgcgcgctggccgacttcaagagcggcgagctgcaagtgctg
gtggccaccgacatcgccgcgcgcggcctggacatcgaccagctgccgcacgtggtcaac
ttcgagttgcccaatgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcc
ggcagcccgggcgaggcgctgtcgctggtgtgcgtggatgaattcagcttcctgcgcgac
atcgagaagctgatcaagatgtcgatcgagcgcttcaccgtgccgggcttcgaggccgac
ctcaacgtcaagccggaaccgattccgatgggcggcggcgcccgcggccgcggccagggc
gcgccgcgcgcgcagggtcaaggccgtggccaaggccagaaccgcggccaagggcagggc
cagccgcgcaacgcgccggctaagccgcgccaccagaccgaaagcaagccggccggccat
ggccgcaacggcggcccgcgccaggggcaaggccagggcgcgcgcaccgagggcagccgc
tccgccaaaccggccgcgcccaagtccgcgctgttcagcccgcccaagaaccgctga
DBGET
integrated database retrieval system
