Chromobacterium paludis: FYK34_18205
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Entry
FYK34_18205 CDS
T06224
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
chrm
Chromobacterium paludis
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chrm03016
]
FYK34_18205
Enzymes [BR:
chrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FYK34_18205
Transfer RNA biogenesis [BR:
chrm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FYK34_18205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Rx_N
Motif
Other DBs
NCBI-ProteinID:
QEL57361
UniProt:
A0A5C1DKW4
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All DBs
Position
3850165..3852039
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AA seq
624 aa
AA seq
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MNVFYEESGSFKVGSIVSRSDASLQVDTQHGKRAKIKSANVFLEFNSPLADFLPAADKLA
ADIDLDFLWECSPDDEFGYQDLAADYFGHEPSAFEAAALISSLHGAPMYFYKKGKGRYKK
APQEALQAALAGVERKKREQEQIDGWVSQLKAGELPEAIRSQLMQLLWKPDKNTLEFKAF
DQASRETGLPPLRLADKVGGIPSVPAYLMAGFQMEYFPKGTGFGKYAPPAELPELPVSSA
RAFSIDDANTTEIDDALSVEELPNGNKRVGIHIAAPTLGVPLDSDIEKMVLSRLSTAYFP
GDKITMLPDDVVQAFTLQEGRDCPAFSLYAEVTPEFEPVAFENRIEKVHIAANLRHAELE
QVFNEETLANDPGVDYPFKRELVWLWQFAEALEKRRGKYDPTRPVQHDYNIDVVDGQVSI
TIRKRGAPMDKLVSELMILANSEWGRMLAEADIPAMYRAQSMGKVRMTTRPEPHMGLGVA
QYAWSTSPLRRASDFINQRQLASMIRGEKPQYAQGDAMLFAILRDFDATYGAYLSFQDKM
EHYWCLKYLLQENITEPTAAVIKEDLVRIDGLPLRLRIPGLPELARGDRIQLSVVKVDLL
TQEVELRYIGRLDHVEEDLEDEEG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttttttacgaagagagcggcagtttcaaggtgggcagcattgtgtcgcgcagc
gacgccagcctgcaggtggacacccagcacggcaagcgcgccaagatcaagagcgccaac
gtgttcctggaattcaattcgccgctggcggacttcctgccggcggcggacaagctggcg
gccgacatcgacttggacttcctgtgggagtgcagcccggatgatgaattcggctaccag
gacttggccgccgactacttcggccatgagccgtccgccttcgaggccgccgcgctgatc
agcagcctgcacggcgcgcccatgtacttctacaagaagggcaagggccgctacaagaag
gcgccgcaagaggcgctgcaggccgccctggccggcgtggagcgcaaaaagcgcgagcag
gagcagatcgacggctgggtgagccagctgaaagccggcgaattgccggaagccatccgc
tcccagctgatgcagctgttgtggaagccggacaagaacacgctggagttcaaggccttc
gaccaggccagccgcgaaaccggcttgccgccgctgcgcctggcggacaaggtgggcggc
atcccgtcggtgccggcctacctgatggcaggcttccagatggagtactttcccaagggc
actggcttcggcaagtacgcgccgccggccgagctgccggagctgccggtttccagcgcg
cgcgccttctccatcgacgacgccaacaccaccgaaatcgacgacgccttgtcggtggag
gagctgcccaacggcaacaagcgcgtgggcatccacatcgccgcgcctacgctgggcgtg
ccgctagattccgacatcgagaaaatggtgctgtcgcggctgtccaccgcctacttcccc
ggcgacaagatcaccatgctgccggacgatgtggtgcaagcgtttacgctgcaggaaggg
cgcgactgcccggccttctctctgtatgccgaagtgacgccggaattcgagccggtggcc
ttcgaaaaccgcatcgagaaagtccacatcgccgccaacctgcgccacgccgagctggag
caggtattcaacgaggagaccctggccaacgatccgggcgtcgactacccgttcaagcgc
gagctggtgtggctgtggcagttcgccgaggcgctggaaaagcgccgcggcaaatacgac
ccgacgcgcccggtgcagcacgattacaacatcgacgtggtcgacggccaggtgtccatc
accatccgcaagcgcggcgcgccgatggacaagctggtgtccgagctgatgatcctggcc
aacagcgaatggggccgcatgctggccgaggccgacatcccggccatgtaccgcgcccag
agcatgggcaaggtgcgcatgaccacgcgtccggagccgcacatgggcctgggcgtggcc
cagtacgcctggagcacctcgccgctgcgccgcgccagcgacttcatcaaccagcgccag
ctggcgtccatgatccgcggcgagaagccgcaatacgcccagggcgacgccatgctgttc
gccatcctgcgcgacttcgacgccacttacggcgcctatctgtccttccaggacaagatg
gagcactactggtgcctgaagtatctgctgcaggaaaacatcaccgagccgaccgccgcc
gtgatcaaggaagacctggtgcgcatcgacggcctgccgctgcgcttgcgcattcccggc
ctgccggaactggcccgcggcgaccgcatccagctgtcggtggtcaaggtggacctgctg
acccaggaggtggagctgcgctacatcggccgcctggaccatgtggaagaagacctggaa
gacgaagagggctga
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