Chromobacterium paludis: FYK34_19870
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Entry
FYK34_19870 CDS
T06224
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FYK34_19870 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrm03400
]
FYK34_19870 (recB)
Enzymes [BR:
chrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FYK34_19870 (recB)
DNA repair and recombination proteins [BR:
chrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FYK34_19870 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_11
ResIII
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
QEL57662
UniProt:
A0A5C1DM26
LinkDB
All DBs
Position
4168376..4171936
Genome browser
AA seq
1186 aa
AA seq
DB search
MSAMQALDALNCPLAGVNLIEASAGTGKTWTIAALFVRLLLEERDGAPPPLIDQVLVVTY
TKAATAELRERLRKRLAEMLALLDGKADGDDFLRTLAARFPEGPARDVARQRLTAAVNGF
DAAAIYTIHGFCQRVLTDAAFESGQTFQAELVDDDAARLAEIVDDFWRRRIVAAPLLAQV
LVERGETPDAWLAEIRPYLSKPYLKLRAPDAAGLETARRTASERWQRLAAAPERVEEGLA
RFLDHPGFKANIYRPDTMARAADALRGWLAQPDDLPELDSDSRKLMEKLLPEALAKGMKK
GCEPPAHPLFELVEAWLDAWGAYLEQVAKSLAGLKLELIAWANEELARRRGVERSRSFDD
LLTDLGAALAHPETGPLLAAQVADSFAVALIDEFQDTDPTQYRIFRRCFVEEARPVFLVG
DPKQAIYSFRGADIFAYLAARHDAERQYTLDTNRRSDAPLVATVNALFGRELPFLLDGIA
YQPVAASPSSGGRLEVDDDRAPFNAQWIQAGEKELSKEAAERAAAEACANEIARLLTLAG
EGRAAIVQGEARRPLAGGDIAVLVATHSQGDRVRGELRARGVASVALTQESVFASREAGE
LLAVLHAWAEPANEGRLRRALATELAGLNAAEIKAELEDETRWEAQLLKNADDHQRWRER
GFMAAWRHWFARERAAERLLPLPDGERRLTNLGHLAELIQQESESRQGMAPLLAWFAARV
ADPPRGEEAALRLESDAALVKIVTVHTSKGLQYPVVFCPFLWNGALERRGASFWSYHDGD
EPWLAPEAAADDAVKQAARSELLAEKLRLLYVALTRAQYRQYIAWGWVRELKTAALSWLL
HAPGARDLAALEALELDGGMVEAQLRDFLAGRGEAARWLAEVEPSALAGSHDGGRVYAAR
PFARKLYTPWRIASFTSLTHDAGSHLAEAPDYDRAARQAAAEPAAEPARDRFRFPRGAKA
GVCLHEIFENIGFGADEDEIRAAVARALARHGFGEEWLDAGCDLILSTLNAEIAPGARLR
EVADGKRLIELEFTLPVKQLDVGALIAVLQKPEHGLAEPFRQAAAALDFASVQGYLKGFI
DLVCEAGGRYYLIDYKSNHLGDDYGAYREDSLVQAVAREHYYLQYLIYLVALRRYFAARG
ADWDGCFGGVRYLFLRGMGEPGCGVWADAPSAALLDALDGLLKRDR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgatgcaggcgctggacgcgctgaactgcccgctggcgggcgtcaacctgatc
gaggcctcggccggcaccggcaagacctggaccatcgccgcgctgtttgtccggctgttg
ctggaagagcgcgatggcgcgccgccgccgctgatcgaccaggtgctggtggtgacctac
accaaggccgccaccgccgagctgcgcgagcggctgcgcaagcggctggccgagatgctg
gcgctgctggacggcaaggccgacggggacgattttttgcggacgctggccgcgcgcttt
ccggagggcccggcgcgtgacgtggcccgccagcggctgactgccgcggtcaacggcttc
gacgccgccgccatctacaccatccacggcttctgccagcgggtgctgaccgacgcggcg
ttcgagagcggccagacctttcaggccgagttggtggacgacgacgcggcccggctggcc
gagatcgtcgacgatttctggcgccgccgcatcgtcgccgcgcccttgctggcccaggtg
ctggtggagcgcggggaaacgccggacgcctggctggccgagatccgcccctatctgtcc
aaaccgtatctgaagctgcgcgcgccggatgcggcggggctggagacggcgagacggacg
gcgagcgagcgatggcagcggctggctgccgcgccggagcgggtggaggaggggctggcg
cggttcctcgaccaccccggtttcaaggccaatatctaccggccggacaccatggcgcgc
gccgccgacgcgctgcgcggctggctggcgcagccggacgacttgccggagctggacagc
gacagccgcaagctgatggaaaaactgctgccggaggccttggccaagggcatgaagaaa
ggctgcgagccgccggctcatcccttgttcgaactggtggaagcctggctcgacgcctgg
ggcgcgtatctggagcaggtggccaagtcgttggccgggctcaagctggagctgatcgcc
tgggccaacgaagagctggcgcggcggcgcggcgtggagcgcagccgcagcttcgacgac
ctgctgaccgacctgggcgcggcgctggcgcacccggaaaccggcccattgctggcggcg
caggtggcggacagcttcgccgtggccttgatcgacgaattccaggacaccgatcccacc
cagtaccggatcttccgccgctgcttcgtcgaggaggcgcggccggtgttcctggtgggc
gatcccaagcaggcgatctacagcttccgcggcgcggacatcttcgcctacctggcggcg
cgccacgacgccgagcgccagtacacgctggacaccaaccgccgctcagacgcgccgctg
gtggccaccgtcaacgcgctgttcggccgcgagctgccgttcctgctcgacggcatcgct
taccagccggtggcggccagtccctcgtccggcggcaggctggaagtggatgacgaccgc
gcgccgttcaacgcgcaatggatacaggccggcgaaaaagaattgagcaaggaggccgcg
gaacgcgcggcggccgaagcctgcgccaacgagatcgcccgcttgctgacgctggcgggc
gagggccgcgccgccatcgtccagggcgaggcgcggcggccgctggccggcggcgacatc
gcggtgctggtggccacccacagccagggcgaccgggtgcgcggcgaattgcgcgcgcgc
ggcgtggccagcgtggcgctgactcaggagagcgtgttcgccagccgcgaggccggcgag
ttgctggccgtgctgcacgcctgggccgagccggccaacgagggccggctgcgccgcgcg
ctggccaccgagctggcgggcttgaacgccgcggagatcaaggccgagctggaggatgag
acacgctgggaagcccagctgctgaagaacgccgacgaccaccagcgctggcgcgagcgc
ggcttcatggccgcctggcggcactggttcgcccgcgagcgcgcggcggagcgcttgctg
ccgctgccggacggcgagcggcggctgaccaatctgggccacctggccgaactgatccag
caagagagcgaaagccggcagggcatggcgccgctgctggcctggttcgccgcccgcgtc
gccgatccgccgcgcggcgaggaggcggcgctcaggctggagagcgacgcggcgctggtg
aagatcgtcaccgtccacacgtctaagggtttgcagtacccggtggtgttctgcccattc
ttgtggaatggcgcgctggagcggcgcggcgccagcttctggagctatcacgacggcgac
gagccctggctcgcgccggaggcggccgccgacgacgcggtgaagcaggcggcgcgcagc
gagctgctggcggagaagctgcgcttgctgtacgtggcgctgacccgcgcccagtaccgg
cagtacatcgcctggggctgggtgagggaactgaagaccgccgcgctgtcctggctgctg
cacgcgccgggcgcgcgcgatctggcggcgctggaggcgctggagctggacggcggcatg
gtggaggcgcagctgcgcgatttcctggccggccgcggcgaggcggcgcgctggctggcg
gaggttgaacccagcgcgctggcgggcagccatgacggcggccgcgtctacgccgcgcgg
ccgttcgcgcgcaagctgtacacgccttggcgcatcgccagcttcacgtcgctgacccat
gacgccggcagccatctggccgaagcgccggattacgaccgcgcggcgcggcaggcggcc
gcagagccggcggcggaaccggcgcgggaccgcttccgtttcccgcgcggggccaaggcc
ggcgtctgcctgcatgaaatcttcgagaacatcggcttcggcgcggacgaggacgagatc
cgcgcggcggtggcgcgcgcgctggcgcggcatggttttggggaggaatggctggacgcc
ggctgcgacctgatattgtccacgctgaacgccgaaatcgcgcccggcgcgcggctgcgc
gaggtggcggacggcaagcggctgatcgagctggagttcacgctgccggtcaaacagctg
gacgtgggcgcgctgatcgccgtcttgcaaaagccggagcacggcctggccgaaccgttc
cgccaggccgcggcggccttggattttgccagcgtgcagggttatctcaagggcttcatc
gacctggtgtgcgaggcgggcggccgctactacctgatcgactacaagtccaaccacctg
ggcgacgactacggcgcttaccgtgaggacagcctggtccaggcggtggcgcgggagcat
tattacctgcagtacctgatttacctggtggcgctgcgccgctacttcgccgcgcgcggc
gcggattgggacggctgcttcggcggcgtgcgctatctgttcctgcgcggcatgggcgag
cccggctgcggcgtgtgggcggacgcgccgagcgcggcgctgctggacgcgctggatggt
ttgctcaagagggatcggtag
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